Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1633 ATGGCTGCGAGGAAGGATTTCATCAGAGATATCAATCCAACCAAGCTTGCCTGGTCCTTGGTTGTGGGGGTTGCTCGATTGTATGAGTTTCCAAGTCAGTGGAACAAGAATGAGGTGTTTAGCTTGGAGTTGGTTTTACAAGATGAGAAGGGTGATAGAATTCATGCAACCGTTTGCAAGCCTGGGTTGGAGTTGTTCAAAAATAGGATAAAGGAGCATTGTGTTTATAGTATGCAAAATTTTATTATTAAGCTTAAGAATGGAAAGGTTAGGACAACTCCTCACAAGTACAAGCTTAACTTTTATACAAAGACTGTGGTGGCAGTCTTACCTATTGAGACTTTTGCTTTTAACCCATTCAAGTTTCGTCCGTTTCATGAACTTGATGAAAATGGTTCAACCGACGGAAATCTATTATTTGATTACATAGGAAAGGTTGTTGGAAAGGAAGAGGTCAGGGGGCTGATTACACGCACTGGTGATGAAACGAAGCTTATTACACTTCAGTTGGAAGATCTAGACACCTACTATGTGTCCACATGTTACTTCAATCCAAACCTTCCTGAGGTTATTGACTTCAAGAAAAGATTGGCAACGGATTTTGTTCCCTGTTCACAACGAATTAGTCAGCTGGAAGCTCAACCTCAATACTCAGTCACAGATGAGATCAATGCTAGCATTGTACCAGTGCGCACTATAGAAGAGGTTCTTAATATGACTGAGGAAACGTCATGTTGGATTGTTGGGACCATTATTTCTCTAGAGACATGTCCTAAGAAGGTTGTGCAGAGCAAAGATAGGTATTGGTATGATAATTGTAGGCGTGTAGACTTCAAGGTTATGCTAAGGTATAGGCTCCAAGTAATTGTGACTGATGGAAGTGGTTGTCTAAACCTCCTTGTGTGGAACAAAGAAGCAGAGCAAATGATAGAAAAGGCTGCTGAGAAAGTTAAGGAATTATCTTGTGAGAAAGGAGAGTCATACCCTAAATACCTGGAGAATATGATTGACAAAAGGTTCTTATTCAAGCTTAACATCACTTACAAGAATATCAATGCTATGGAAGGGGTGTACATCGTCACAAAACTTTCGGACGACGAGTCCCTCATGTCCAGTTATGGTGTGCCTAACTCTTCTTCTGATGCTTCTATGCTAGCTAATATCCCTATAGTTGAAACAGACGAAGATAGCAATGGACATGCTGCAGTTTCCCTGTCCAAGAGCAATTGCGATAGCTCCTATCAAACTCCAGCCAAGAAAACCTCTACTGATGCAGTTGATGACTCCCCAGCAGAAGCAGCCCTGTCTCCAGATGTTCAGGCATCACTGGCTACAGCTGGTAATGTTGTCCAAGATTTTAAGCCTTACAAATTATGTTATTTATTAGCCCATTCGCCAGAAAACTCTTTCCCTTTATCACATATTGACATCATTCTCCAATCCTCGATTGAAAAGTATACTAATTAA 1467 0.4063 MAARKDFIRDINPTKLAWSLVVGVARLYEFPSQWNKNEVFSLELVLQDEKGDRIHATVCKPGLELFKNRIKEHCVYSMQNFIIKLKNGKVRTTPHKYKLNFYTKTVVAVLPIETFAFNPFKFRPFHELDENGSTDGNLLFDYIGKVVGKEEVRGLITRTGDETKLITLQLEDLDTYYVSTCYFNPNLPEVIDFKKRLATDFVPCSQRISQLEAQPQYSVTDEINASIVPVRTIEEVLNMTEETSCWIVGTIISLETCPKKVVQSKDRYWYDNCRRVDFKVMLRYRLQVIVTDGSGCLNLLVWNKEAEQMIEKAAEKVKELSCEKGESYPKYLENMIDKRFLFKLNITYKNINAMEGVYIVTKLSDDESLMSSYGVPNSSSDASMLANIPIVETDEDSNGHAAVSLSKSNCDSSYQTPAKKTSTDAVDDSPAEAALSPDVQASLATAGNVVQDFKPYKLCYLLAHSPENSFPLSHIDIILQSSIEKYTN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1633 488 SUPERFAMILY Nucleic acid-binding proteins 229 363 IPR012340 -
Amo14g1633 488 PANTHER BNAC07G49340D PROTEIN 202 447 - -
Amo14g1633 488 SUPERFAMILY Nucleic acid-binding proteins 8 111 IPR012340 -
Amo14g1633 488 Gene3D - 7 108 IPR012340 -
Amo14g1633 488 Coils Coil 303 323 - -
Amo14g1633 488 CDD RPA1_DBD_A_like 19 107 - -
Amo14g1633 488 Gene3D - 219 370 IPR012340 -
Amo14g1633 488 Pfam Replication factor-A C terminal domain 255 352 IPR013955 -
Amo14g1633 488 CDD RPA1_DBD_C 247 352 IPR013955 -
Amo14g1633 488 PANTHER BNAC07G49340D PROTEIN 28 162 - -
Amo14g1633 488 Pfam Domain of unknown function DUF223 43 108 IPR003871 -
Amo14g1633 488 PANTHER REPLICATION FACTOR A 1, RFA1 28 162 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo14g1633 488 PANTHER REPLICATION FACTOR A 1, RFA1 202 447 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1633 Amo-Chr14 30297906 30300972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1633 255 353 Core DNA Replication Machinery Family AT5G08020 31.373 1.41e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1633 - - adu:107463979 792.341