Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1608 ATGGCTAAACTTGAGTCTGATCACACTCCCCCACCCACAATGAGCCCTACCATAAGCAAACCATGTTACCCTCCACAAAATTCAGGTGGCTTCAACTTAATGGTTATTTTGGCGGCCGTTCTATGCGCCTTCCTTTGCGCGCTAGGCCTCCTCAACACCATGCTACAATGCGCGAGTCGCGTCCTCACGGAGCCTTTACAATGGATTGCTACCAGAGGGATCAACTCAGGGCTCAAGAAGAAAGAAATGATAAGATTTCTTCCAAAGTGTAATCATCGTTTTCATGTGGCTTGCATTGATAAGTGGCTTCTTTCCCATTCCTCTTGCCCAACATGTAGGAACTTCCTCAAGTCCAATGATTCATCACACCCTTTTCATATTCTCATAGCTTAA 393 0.458 MAKLESDHTPPPTMSPTISKPCYPPQNSGGFNLMVILAAVLCAFLCALGLLNTMLQCASRVLTEPLQWIATRGINSGLKKKEMIRFLPKCNHRFHVACIDKWLLSHSSCPTCRNFLKSNDSSHPFHILIA* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1608 130 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 21 84 - -
Amo14g1608 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 116 IPR013083 -
Amo14g1608 130 ProSiteProfiles Zinc finger RING-type profile. 90 113 IPR001841 -
Amo14g1608 130 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 81 118 - -
Amo14g1608 130 PANTHER OS06G0666500 PROTEIN 81 118 - -
Amo14g1608 130 Pfam RING-H2 zinc finger domain 83 113 IPR024766 GO:0008270
Amo14g1608 130 PANTHER OS06G0666500 PROTEIN 21 84 - -
Amo14g1608 130 SUPERFAMILY RING/U-box 79 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1608 Amo-Chr14 29254719 29255267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1608 32 116 C3H Transcription Factor Family AT3G10910 37.984 1.84e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1608 - K19040 ahf:112794746 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1608 14 29254719 29255267 Amo04g0480 04 9787062 9787613 hybridization