Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1559 ATGGCATCATCACAAGTTGAAATTGCTTCGTCTTCGCCCTTTGGTTTGGTTCTGAGGGACCGTAACCACCGTGGTGATGGATGCAGAGAAAGCAATGTTGTTAATAAGGCCACACATGCTGCTCTTCAAAGGAACATCAAGAACTTCGTCATGGACCACCTTAACATGTCCATGTCCATGTCCAACTCCGATTCAACAAGAAATCTCAACGAGAACAATTCTGCCCATTGGAACGAAATTCATCATAATCAAGATCGGCGCCACCACCGGCGCCACCGCAACGTATCGAATCTTCATGTCTCAAATGCCATGGAGTTCAAGGATGGATCCTCATTGAACTCTTTGATTAGCCCGAGACAAACCCGGCTTCTTGATCGCTGGGCCGCGAAACAAGCCCGGGAGATTGTTTCAAATTTAGAGAGTGAGGCTGGGTTGTTGTCAATTGATAATAACAAGAAAGAACTTGGAAGCACAGGTAGTTGCAACTCTGATGGTGATGATAATAAGTGTGTAGATATCTCGAACCTTGCTGCTTCTTCACTTGTTCAGATATGGGAGAAGAGGCTCAGTGGATCCAAGCCTGAAACGACGGCGTCTAATGGCGCCAAAACTAGTCCCACTGCTGTTACTTCCACCAATAATTGTGATTCTGAGGCAGGGGAATCTTCTTCCTGCGCCGTGGCGAACGAGGACTGGGAAACACACAGTGATCAGTCCTTTTCGCCACAATCGCGGTGGTCGTCTTGCGAGACTGCAACAACAGAGGCAGAAAGGCCGGTTTCTGTTGCAGACATAATAAAGAGGCTAACTACACCAAGTGTCCATGGCGATGACAATGAATCTGAGGGGTTTATTAGCAGCGTGGCAAGCTCTCCTTGCAGAGATTTAGCACCGGAGAATTCTGAGAGGAGGGCTTTTCCCCTCATGATTGGTGCCCCGGGAAGGATTCGAGGCCGCCGGATTTTCACCGATATGCTTATGCAGCTGGAGAGGGACCGCCGAGGGGAGCTTAACCACCTGGCAGAACGCCGAGCCGTGTCGAGGTTCCCTCAAAAAGGTCGAATTCAGTCATTGCTTCGATTAAGATTGTTGCAGCGGAATGCAGCTGCTGAGAATGATAAATCTCAACAGAAATCAACATTATCTAGACAGAACAAACAGACACAAGAATCTGCTGTTGTTATGGAACGAAGGGGGAAATTTAGCACCGCAGTTGAACACAGAAATGCGGAACAGGCAGAAGTAGCTCATCCAACAACGTCACGGGTACAGACAGTTACAAATCCTGTAGTGTCGGATAAGTCTGCTGCGGCTACTCAACCTGGCAAAGACACTTGCAACCAGACTGTTGTTCATGAGACTGCTAATAGCTCTGGAGAATCCACACAAGTATCAATCCCTGAGACTAATGCAGATCACAATAAAGAGAAAGAACATGCAAGTTCACATGTGACACTGCTAGAAACATGTGCAGAGGTTCAAAATAATGATTCGCATGATACTGCCAAGGCACCAACATCGATGATGGCTGATGATTCGGGCCATAATGAGATTGCAAACGGGGCAGAGTCAAGCGAACAACAGCATGCTGTAGAAGGGAAAGATGCAACAGATCAACACAATGATGAAAGCAATTATGATGATATGTTAGAAGAGGTAGAGGTCATGGATCAGAACTATGATGCAACTAGTTATGACTGGATCAGCGAAATTTCTCGACCGAGGAGCTACTGGGAAGAGCGTAGGCAAGCATGGTACAAAGAGATGCTTGCCACTTCTCAAAATGAGGATATACGTATTCTCCTTGAAAGAAAAACAGTCTCGACTTTCCTTTCCAGCAGCTTCCGGGCAGTGATAGATAGATTGATGAACTCCCATAAGGGAACACAGACACAACTAATCAATTGTCAAGATGACGAGGACGAAAACCAAATTCTGATGGCGTATCTACAAGAACGCATGCGTTCTGCAAAATCTCCTCAAGAAGACAAACAAGAGGGAGGAGGGGAGGAGGAAAAGCGAGACGAGATGCAAAATGCTGGACAAGAAGAGGAGGAGCAGAGGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCGGGAGCGGTGTCATGAAGATGTTGAGTATTTTCAACAATCCTCATCACCATGCCCTTCAAGAACATGGAGTTATAAAGACAATGAAACCTGTGATGATTCTGATGGAGTAGTATTTGCATGTGCATCTGCATCTACATATTCTCCTTCACATTCACAACCCTCTCAGTTTCGATCTGCATATCAGGATAATAGGCGAAGTTCTTCACCGCCTAATCATCATTCAATGGAAATGGAACTCATCTATGATTTGAGAAGACAAATGGAGCAACTTCATCATGAGATGTCTGAGCTAAGGAAATCGATTAAGAGCTGCGTGGATATGCAGATTCAGATGCAATTACAACAACAATCCATGGTTCAAACAGTTAACAAAGAAGAAAACATGACGCAGAAGAAGGTACCAAAAAAAGGCAATTGCTGTTTATGCCATGATAATAAAGCTGACTCAATTTTATACAGGTGTGGGCACATGTGTGCGTGTCTAAAGTGTGCCAATGAGCTGCAATGGAATGGTGGAAAGTGTCCAATTTGTCGAGCCAAAATATTAGATGTTGTTCGAGTATACATTGATGCTTAG 2673 0.4545 MASSQVEIASSSPFGLVLRDRNHRGDGCRESNVVNKATHAALQRNIKNFVMDHLNMSMSMSNSDSTRNLNENNSAHWNEIHHNQDRRHHRRHRNVSNLHVSNAMEFKDGSSLNSLISPRQTRLLDRWAAKQAREIVSNLESEAGLLSIDNNKKELGSTGSCNSDGDDNKCVDISNLAASSLVQIWEKRLSGSKPETTASNGAKTSPTAVTSTNNCDSEAGESSSCAVANEDWETHSDQSFSPQSRWSSCETATTEAERPVSVADIIKRLTTPSVHGDDNESEGFISSVASSPCRDLAPENSERRAFPLMIGAPGRIRGRRIFTDMLMQLERDRRGELNHLAERRAVSRFPQKGRIQSLLRLRLLQRNAAAENDKSQQKSTLSRQNKQTQESAVVMERRGKFSTAVEHRNAEQAEVAHPTTSRVQTVTNPVVSDKSAAATQPGKDTCNQTVVHETANSSGESTQVSIPETNADHNKEKEHASSHVTLLETCAEVQNNDSHDTAKAPTSMMADDSGHNEIANGAESSEQQHAVEGKDATDQHNDESNYDDMLEEVEVMDQNYDATSYDWISEISRPRSYWEERRQAWYKEMLATSQNEDIRILLERKTVSTFLSSSFRAVIDRLMNSHKGTQTQLINCQDDEDENQILMAYLQERMRSAKSPQEDKQEGGGEEEKRDEMQNAGQEEEEQRQEQEQEQEQERERCHEDVEYFQQSSSPCPSRTWSYKDNETCDDSDGVVFACASASTYSPSHSQPSQFRSAYQDNRRSSSPPNHHSMEMELIYDLRRQMEQLHHEMSELRKSIKSCVDMQIQMQLQQQSMVQTVNKEENMTQKKVPKKGNCCLCHDNKADSILYRCGHMCACLKCANELQWNGGKCPICRAKILDVVRVYIDA* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1559 890 MobiDBLite consensus disorder prediction 369 392 - -
Amo14g1559 890 MobiDBLite consensus disorder prediction 656 707 - -
Amo14g1559 890 Coils Coil 367 387 - -
Amo14g1559 890 PANTHER BNAC05G24000D PROTEIN 1 889 - -
Amo14g1559 890 SUPERFAMILY RING/U-box 837 882 - -
Amo14g1559 890 MobiDBLite consensus disorder prediction 528 543 - -
Amo14g1559 890 MobiDBLite consensus disorder prediction 369 395 - -
Amo14g1559 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 820 889 IPR013083 -
Amo14g1559 890 MobiDBLite consensus disorder prediction 408 448 - -
Amo14g1559 890 MobiDBLite consensus disorder prediction 653 721 - -
Amo14g1559 890 MobiDBLite consensus disorder prediction 414 448 - -
Amo14g1559 890 PANTHER BNAC05G24000D PROTEIN 1 889 - -
Amo14g1559 890 Coils Coil 670 701 - -
Amo14g1559 890 MobiDBLite consensus disorder prediction 191 254 - -
Amo14g1559 890 MobiDBLite consensus disorder prediction 743 772 - -
Amo14g1559 890 Coils Coil 779 799 - -
Amo14g1559 890 Pfam Zinc finger, C3HC4 type (RING finger) 835 882 - -
Amo14g1559 890 CDD mRING-HC-C3HC5_NEU1 837 877 - -
Amo14g1559 890 ProSiteProfiles Zinc finger RING-type profile. 838 877 IPR001841 -
Amo14g1559 890 MobiDBLite consensus disorder prediction 495 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1559 Amo-Chr14 28053198 28058074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1559 838 886 C3H Transcription Factor Family AT3G06140 36.735 4.84e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1559 - - ahf:112741787 1680.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1559 14 28053198 28058074 Amo04g0426 04 8311251 8316029 hybridization