Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1516 TTTTTTTTCATTTTTCCCAAAATAGTGAAATACCCTGTTCCTCTCGCTCTCGCTCTCGCCCGCTTCTCCCATCCCATCAGTTCTCGCCACAACCAAAGGAACCCTCTCTGCTCACGCCATCGCCAAATTCTATTCCAAAGAACACAACCACACATGTTCTGCACTTCACAATCACACTCTTTGACGGTTTCATACCTCATCAATAACCTTGGCTTCACCCCACAATCTGCTCTAAACGCATCAAAACGGCATCGTTTCAAGACCCCACACAAGGCAGACTTAATCATCGCATTCTTCAAGACCCATGGATTCTCCCATTCCCAAATCGCTTCCATTGTTGCTAAGCTACCTAAGATACTTTCAGCCAATCCGGAAAGAATCCTGCCAAAGTTTCAATTTCTGGCCTCCAAAGGTGCTTCCACCGATGACATTGTTCTGCTAGCCACTAGGAACCCTAGATTCTTGCATTCGAGCCTCAAGAACAACATAATCCCTACTTATGGAATGATGAACACCTTCTTTGAATCCGATCAGAAAACGCTCCGTTGCATTGCTTCTTTCCCTGCTTTGTTCATGGAGCCTCGCTTGCCAAAAAATGTCAAGTTGTTGGCTGATGCAGGAGTATCTAACTCCGCAATCCGCCATTTGTATCGTACCAGAGTGTCCGTGCTCTTTTCTTCTGATTTGAGGAAGCCTGTGGATGAAGTAAAGGAATTAGGGTTTGATCCGTCATCGGTTAAATTCGCCATAGCTTTGCTAGCCAAGAAGACTATACGGAAATCACTGTGGGATGCGAAAGTCGATATCTTGAAGAGCTGGGGTTGGTCTAAAGAAACAACGTCCCAAGCATTCAGGAGGAACCCTTTATGTATGCTATCATCTAAGGATAAGATTAATGAGGTGATGAAACTTTGGGTCAATCAATTAGGTTGGGACCCTTTGAGTCTTGCCAAGATTCCATGGCTTTTTGGATATAATTTGGAGAGAAGGATTATTCCAAGGGCTTTTGTTCTCCAGTATTTACTTTCAAGAGGTCTGAGAAACAAGAATGATGATTTAAGTACCCCATTTTATGTTTCTGAAGAGTTGTTCTTTAACAAGTTTGTGGAATGTTTTACCAAGGAAAGGTCTCAACTACGTAAGATATACTATGAGAAAAAAGGATGTTCATGA 1173 0.428 FFFIFPKIVKYPVPLALALARFSHPISSRHNQRNPLCSRHRQILFQRTQPHMFCTSQSHSLTVSYLINNLGFTPQSALNASKRHRFKTPHKADLIIAFFKTHGFSHSQIASIVAKLPKILSANPERILPKFQFLASKGASTDDIVLLATRNPRFLHSSLKNNIIPTYGMMNTFFESDQKTLRCIASFPALFMEPRLPKNVKLLADAGVSNSAIRHLYRTRVSVLFSSDLRKPVDEVKELGFDPSSVKFAIALLAKKTIRKSLWDAKVDILKSWGWSKETTSQAFRRNPLCMLSSKDKINEVMKLWVNQLGWDPLSLAKIPWLFGYNLERRIIPRAFVLQYLLSRGLRNKNDDLSTPFYVSEELFFNKFVECFTKERSQLRKIYYEKKGCS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1516 390 PANTHER CGI-12 PROTEIN-RELATED 41 386 IPR003690 GO:0003690|GO:0006355
Amo14g1516 390 Gene3D Transcription termination factor 3, mitochondrial 192 381 IPR038538 -
Amo14g1516 390 SMART mt_12 214 242 IPR003690 GO:0003690|GO:0006355
Amo14g1516 390 SMART mt_12 110 140 IPR003690 GO:0003690|GO:0006355
Amo14g1516 390 SMART mt_12 145 177 IPR003690 GO:0003690|GO:0006355
Amo14g1516 390 SMART mt_12 313 347 IPR003690 GO:0003690|GO:0006355
Amo14g1516 390 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Amo14g1516 390 SMART mt_12 181 209 IPR003690 GO:0003690|GO:0006355
Amo14g1516 390 Pfam mTERF 97 246 IPR003690 GO:0003690|GO:0006355
Amo14g1516 390 Pfam mTERF 265 361 IPR003690 GO:0003690|GO:0006355
Amo14g1516 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 41 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1516 Amo-Chr14 26402678 26404050 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo14g1516 mTERF 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1516 K15032 - gmx:102666739 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1516 14 26402678 26404050 Amo04g0388 04 7600643 7609952 hybridization
Amo01g3487 01 107525656 107527128 Amo14g1516 14 26402678 26404050 PCT
Amo14g1516 14 26402678 26404050 Amo01g3487 01 107525656 107527128 PCT