Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1455 ATGGATCATTCAAATCGGGAAGGCGAACCGAATAGCACAGTGATCAATGCTAATGAAGGCAATGATGAATTGACTGACGATGAAGTTGTTAATCAAGAGGGTTCCAAGGTATGTCACTATGTTGTACCTTGTATAGGAAATCCAGTCATAGGAATGAGTTTTGATTCGCTGCCTTTGGCACAGGAGTTTTATACAAATTATGCAAAGAAATTGGGGTTTGTAACTAAAGTTAGGAACACGAACTTCGACAAGACACGGAAGGACGCAAAGATACCAATTAATCAATCTCTTCACTGCACTCGAGAGGGTTATCGAGAATCTCGGGTTAAGGCAGCAACTAGGTCAAACAGAATAACAGCCACGAGATGCAAAGCAAGGATGTATGTCATGCTGGACAGGGAGAAGGAATGCTGGGTTGTGTCTATAGTAGAATTGAAGCATTCTCACCCCTGTTCGGCTGAGAAAGTTATCCACTATCATGAGTACCGGGAGTTGACCATGCATGCCAAGTGCGTCATTACGGATAACGACGAGGCTGGCATAAGACCCAACAAGACGTATCTAGCACTGGCAAACGAAGTTGATCTTTATGCGAATCGACGTAAGTGGGTGCCAATATTCTTCAAGAGTGAATTTTGGGCCGGCATGAGGAGTACACAGCGGAGTGAAAGTATGCACGCATTCTATGGTGGATACCTGCATTGCAAGAGTGGGTTGGTTCAGTTCGTCCATGAATACGATAACGTGCTTGGAAACAAGGAGCAAAAGGAGCTTGAAGATGATGTTGTGGACTCAAAAGGAGTCATCCCATTGGACGAGCAGAAGGTATTTTGGGGGAAGCCTGTCTACCATACTTTCATAGTAGAGTTTGACCCTCTGAGTCGAAAGAGTCGGTGCGAGTGCAACAAGTTTGAATCCGTTGGTATATTGTGTTGCCACATCCTTGCGGTGTGCTCATACTATAGAGTTGACACAGTCCCGAGTTGCTATGTTCTTCCTCGATGGAGTAAGAATGTCATCCGCAAGCACACTTACATTAAGAGTAGCCATGACGTGGCTCGAAGTAATGAAACCCACAATTTGTTCAAGCATCTGTGTTCGGAGTTCTATAACGTTGCTCAGGATTTTGTTGCTTGTGATGAGGAAGCAGCCATCTTGCGAGCTGCCCTTTCAGATGCAAAGTCCAGGCTGACTGATTACCGTGCCAGCATGCGTTCCACTACTCTTGATGGGACTCAGAATACGATGCCCACACAGAGCACATGCGGTGTTATTGTACATGACATACAGGACCTTCAAGGGTTAAAACCAAAGGACAGCCGAAGGGATGTTGTTGACCTTTACATAGATAATGATCGTGATGGTTCTGTAAAAAACAGATTTGAGAATTCTACTACATGGAATTCATCAGATGGTGGCGGGTTCATGGACCTGTTGAACTCCTTTAGGCATATATAG 1458 0.4472 MDHSNREGEPNSTVINANEGNDELTDDEVVNQEGSKVCHYVVPCIGNPVIGMSFDSLPLAQEFYTNYAKKLGFVTKVRNTNFDKTRKDAKIPINQSLHCTREGYRESRVKAATRSNRITATRCKARMYVMLDREKECWVVSIVELKHSHPCSAEKVIHYHEYRELTMHAKCVITDNDEAGIRPNKTYLALANEVDLYANRRKWVPIFFKSEFWAGMRSTQRSESMHAFYGGYLHCKSGLVQFVHEYDNVLGNKEQKELEDDVVDSKGVIPLDEQKVFWGKPVYHTFIVEFDPLSRKSRCECNKFESVGILCCHILAVCSYYRVDTVPSCYVLPRWSKNVIRKHTYIKSSHDVARSNETHNLFKHLCSEFYNVAQDFVACDEEAAILRAALSDAKSRLTDYRASMRSTTLDGTQNTMPTQSTCGVIVHDIQDLQGLKPKDSRRDVVDLYIDNDRDGSVKNRFENSTTWNSSDGGGFMDLLNSFRHI* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1455 485 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 196 262 IPR031052 GO:0006355
Amo14g1455 485 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 162 IPR031052 GO:0006355
Amo14g1455 485 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 284 364 IPR031052 GO:0006355
Amo14g1455 485 Pfam SWIM zinc finger 295 321 IPR007527 GO:0008270
Amo14g1455 485 PANTHER OS03G0843700 PROTEIN 196 262 - -
Amo14g1455 485 PANTHER OS03G0843700 PROTEIN 36 162 - -
Amo14g1455 485 PANTHER OS03G0843700 PROTEIN 284 364 - -
Amo14g1455 485 Pfam FAR1 DNA-binding domain 62 151 IPR004330 -
Amo14g1455 485 SMART 26again6 297 324 IPR006564 GO:0008270
Amo14g1455 485 MobiDBLite consensus disorder prediction 1 23 - -
Amo14g1455 485 ProSiteProfiles Zinc finger SWIM-type profile. 284 322 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1455 Amo-Chr14 24704589 24708146 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo14g1455 FAR1 9.9e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1455 - - aip:107646531 466.077