Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1433 ATGGAAAAGAAAAGAAAAATCATAGTATCAATAGTTGTTTCACTTTCGCTCATCCTTGTGGCGGTAGTTGCCACTGGGGTCATCATGGCCGTTAATAACAAGAAAAGCAATGGCGCTGATGAAGTGCAAAACACTAAAGAAAGGTTCACGAGTCTCATGTGCCGCAACACACAAGAGGATCAAAACCTCTGTCGCGAGGTTCTAAGCCAAGTTGATGGTTCTTCTTCTTCCGACCCGAAAGCATATATCGACGCCGCCGTGAACGATATCAGAGACAGCGTCACCACCGCCCTAAAGATGATAACGACTGAGGAGGAGTTCTCCAAAGATGACAATGGAATCAAGATGGCCATTGATGGTTGCAAAGAAGTCATGGAGTCCGCATTGAGCAGCCTCGATCTTTTCAGCAATGCGCTTCGCAGCAATCACGACATTAACTCCGTGCAAACGCAAAGCCCCGACCTCAAGAACTGGCTTAGCGCCGTTATCTCATATCAGCAATCTTGTGTTGACATTTTTGAAGATCAAAATGAAGGAGAGAGAAAAATCAAAGAACAACTACAAAGCCAGAGTTTGGATCGTGTTGAGAAGGTTTCCATCATAACTCTCGATATTGTTACTGGTTTAGCTAAGATCATTGAAGATCTTGGTGTGCATGTGCAAATGAAACCCATTMCTTCTTCTGGGCGTGTTCTTCGCGAAGAGGTTGATAACGAGGGGTTCCCCGATTGGTTTTCCTCTTCAGATCGCAAGCTGTTGGCGAAGGATGTGAAGTTTTATGTTCCAAATGTAGTGGTTGCTAAAGATGGTAGTGGAAACTTTAGGACGATTCAGGATGCAATTAACTCATACCCAAAGACAAAGAATTTTCAGGGAAGGTACATTATCTATGTTAAGACGGGGATCTATAAGGAGAATTGTACGGTTCCATCTCATGCAATGAACGTTTTCATGTATGGCGATGGCCCTACTAAGACCATTGTCACTGCTATGAATAAAGCGGGAATGTTTCTTGCGAAGGACATGAGGTTCGAGAATGCAGCTGGTGCAAAAGGGCACCAAGCAGTTGCACTCAGAAATGTAGGAGATTTTTCAGCTTTTTATAACTGCCACATACACGGTTATCAAGACACTTTGTATGTTCAAGCCAACAGACAATTCTACCGCAACTGCGAAATTGCTGGAACAGTTGACTTTATCTTCGGTACATCCCCCGCCGTGATCCAGAGAAGCAAGCTCATTGTGAGGATGCCCTTGCCAACTCAGTTCAATGTGTTGGTCGCAGATGGCACCGTCGAGAGGAATATGACTACTGGCATTGTGATTCAGGAATGCCAGATTGTTCCAGATTCAATGTTTGACCCTGTCAAATATCAAATCAAGACTTATTTGGGTAGGCCATGGAAGGAAGGATCGAGAGCAGTAATTATGGAATCATATCTGGGTGATTGGATTAATCTGGAAGGATGGGCCCCTCATGATGGCAATGAGATGAAAGGCTTCTTAGATATTTGTGAGTATGGAAATACCGGACCAGCTGCTTCAGTTCATGGAAGAATCAAGTGGAAGGGATATCGTGGTATAATAACCAAGAATGAAGCAATGCGATTCACTGTTGCTGAATTCCTCAAGGGTGGACCTAACAATAGTGCTGACCAATGGTTGAACGCTCTTGGTGTTCCTTTTGACAGTGGTTTTCTAAGACCATAA 1710 0.4386 MEKKRKIIVSIVVSLSLILVAVVATGVIMAVNNKKSNGADEVQNTKERFTSLMCRNTQEDQNLCREVLSQVDGSSSSDPKAYIDAAVNDIRDSVTTALKMITTEEEFSKDDNGIKMAIDGCKEVMESALSSLDLFSNALRSNHDINSVQTQSPDLKNWLSAVISYQQSCVDIFEDQNEGERKIKEQLQSQSLDRVEKVSIITLDIVTGLAKIIEDLGVHVQMKPIXSSGRVLREEVDNEGFPDWFSSSDRKLLAKDVKFYVPNVVVAKDGSGNFRTIQDAINSYPKTKNFQGRYIIYVKTGIYKENCTVPSHAMNVFMYGDGPTKTIVTAMNKAGMFLAKDMRFENAAGAKGHQAVALRNVGDFSAFYNCHIHGYQDTLYVQANRQFYRNCEIAGTVDFIFGTSPAVIQRSKLIVRMPLPTQFNVLVADGTVERNMTTGIVIQECQIVPDSMFDPVKYQIKTYLGRPWKEGSRAVIMESYLGDWINLEGWAPHDGNEMKGFLDICEYGNTGPAASVHGRIKWKGYRGIITKNEAMRFTVAEFLKGGPNNSADQWLNALGVPFDSGFLRP* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1433 569 Pfam Pectinesterase 263 545 IPR000070 GO:0030599|GO:0042545
Amo14g1433 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 210 IPR035513 -
Amo14g1433 569 Coils Coil 170 190 - -
Amo14g1433 569 TIGRFAM PME_inhib: pectinesterase inhibitor domain 18 207 IPR006501 GO:0004857
Amo14g1433 569 SMART PMEI_2 45 205 IPR006501 GO:0004857
Amo14g1433 569 Pfam Plant invertase/pectin methylesterase inhibitor 53 204 IPR006501 GO:0004857
Amo14g1433 569 CDD PMEI-like_3 52 211 - -
Amo14g1433 569 PANTHER PECTINESTERASE 12 566 - -
Amo14g1433 569 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Amo14g1433 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 200 IPR035513 -
Amo14g1433 569 PANTHER PECTINESTERASE 12 566 - -
Amo14g1433 569 SUPERFAMILY Pectin lyase-like 263 563 IPR011050 -
Amo14g1433 569 Gene3D - 259 566 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1433 Amo-Chr14 24337096 24339208 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1433 74 566 Carbohydrate Esterase AT4G33230 37.695 1.11e-105 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1433 K01051 - gmx:100815015 575.474