Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1292 ATGGCCTCAGCAAGCAGAGCAACAAACAGAGTTCCCCACCACCAACACCAAAACCAACACCAACAGCAACAACAACAACAGCACCCCACAGCATCTTCATCAAAACGCACTGTCGTACACAACACGAACGACGCGTCAATAAGCAAGGCCATAGCGCAGTACACAGAAGACGCCCGCCTCCACGCCGTTTTCGAGCAGTCCGGCGAGTCCGGCAAGTCCTTCGACTACTCCCACTCCGTCCGCCACACCTCCGAGTCCGTACCGGAGCACCAGATCATCGCTTACCTACTGAAGATCCAGCGCGGCGGCCTCATCCAGCCTTTCGGCTGTATGATTGCCGTCGACGAGCCGTCCTTCCGCATCCTCGGATACTCCGAGAACGCTCGGGACATGCTCGGCATATCACCGCAGTCAGTCCCAACTCTCGAGCGTCTCCCCGGATCCCACGAGGAGGCGCTCACAATTGGTACTGACGTGCGCAGTCTTTTCACCGCCTCCAGCAGCACCCTGCTAGAGAGGGCGTTTGGGGCGCGAGAGATCACGCTCCTCAACCCAATTTGGATCCATTCCCGGAATTCCGGCAAGCCTTTTTATGGAATCTTGCACCGAATCGATGTTGGAATCGTCATCGATTTGGAGCCTGCTAGGACTGAGGACCCTGCACTGTCAATTGCAGGGGCTGTTCAGTCCCAGAAGCTAGCTGTTCGAGCTATTTCGCAGCTTCAGTCGCTTCCCGGAGGCGATGTGAAGATTCTTTGTGACACTGTTGTGGAGAGTGTGAGAGAATTGACCGGTTATGATAGGGTGATGGTGTACAAATTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTATATTGGTTTGCATTACCCTGCTACTGATATACCTCAGGCTTCGAGGTTCTTGTTCAAGCAGAATAGAGTTAGGATGATTGTAGATTGCAATGCTTCGCCATTGAGGGTGGTGCAGGATGAGGCCCTTGTGCAACCCTTGTGTTTGGTTGGCTCCACCCTGCGCGCACCACACGGTTGCCACGCTCAGTATATGGCGAATATGGGGTCGATTGCTTCGCTGGTTATGGCGGTTATCATCAATGCTAATGATGAGGAGGCTGTTGGCGGCCGCAGCTCAATGAGGCTGTGGGGATTGGTTGTTTGCCACCACACTTCGGCCAGGTGTATACCTTTTCCCTTGAGGTATGCTTGTGAATTCTTGATGCAGGCCTTTGGGCTGCAGCTGAATATGGAGCTTCAATTGGCTTCGCAGTCATTGGAGAAGCGAGTTTTGAGGACGCAAACTCTGTTGTGTGACATGCTTCTTAGGGACTCGCCCACTGGCATTGTTACTCAGAGTCCTAGTATTATGGATTTGGTGCGGTGTGATGGAGCAGCTTTGTACTACAAAGGAAACTACTATCCATTGGGTGTAACACCTACTGAATCTCAAATAAGGGATATTATAGAGTGGTTGTTGGCATACCATGGAGATTCGACGGGTTTGAGTACTGATAGTCTGGGTGATGCTGGGTATCCTGGTGCTGCCTCGCTTGGGGATGCTGTTTGTGGGATGGCTGTTGCATATATCACTGAAGGGGATTTTCTTTTCTGGTTTAGGTCTCACACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCTGAGGATAAGGATGATGGGCAGAGAATGCATCCTCGTTCTTCATTTAAGGCATTTTTGGAAGTGGTGAAAAGCCGGAGTTTGCCATGGGATAATGCAGAAATGGATGCGATTCACTCTTTGCAGCTTATTCTGCGAGACTCATTTAGAGATGCCGAGCATAGCAACTCAAAGGCTGTTATGCATTCGCATCTGGCGGATTTTGAGTTGCAAGGGGTAGATGAGCTAAGTTCTGTGGCGAGAGAAATGGTCAGATTGATAGAAACTGCCACTGCTCCCATATTCGCTGTTGACGTTGATGGCCGCATAAATGGGTGGAATGCAAAGGTTGCAGAATTGACAGGGCTTCCAGTCGACGAGGCTATGGGGAAGTCACTGGTTCATGATCTTGTGTACAAGGAGTTCGAAGAAACTGTAGACAAGCTTCTCTCTCGCGCTCTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAATTGAAGACATTTGGCCCAGAAAATCAAAATGGTGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTATGCTTTGTTGGTCAGGACGTTACTGGTCAGAAGGTTGTAATGGACAAATTCATCAACATACAAGGTGACTACAAGGCTATTGTACATAGCCCAAATCCATTGATCCCCCCAATTTTTGCATCGGATGATAACACTTGTTGCTTAGAGTGGAATGCAGCCATGGAAAAGCTTACTGGTTGGGGGCGTGCAGATGTAATTGGAAAGATGTTGGTTGGAGAGGTTTTCGGTAGTTGCTGTCAGTTAAAGGGCTCGGATGCTTTAACAAAGTTCATGATTGTGTTGCACAATTCCCTTGGTGGACAAGATACCGACAAGTTCCCTTTTTCATTTCTTGACCGGCATGGAAAATATGTGCAAGCTTTCTTGACAGCAAATAAGAGGGTTAACATGGATGGTCAGATTATTGGAGCTTTTTGCTTTTTGCAAATTGCGAGTCCTGATCTTCAACAGGCTCTGAAAATACAGAAGCAACAAGAGAAGAATTGCTATGCTAGGATGAAAGAGTTAGCCTATATTTGTCAAGAAATAAAGAATCCACTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACTGGATTGACCGATGAACAAAAGCAGTTTCTTGAGACTAGTACTGCATGTGAGAAGCAAATGTCAAAAATAATACAGGATGTTGACTTGGCAAGCATTGAAGATGGATCAATGGAGCTTGAAAAGGGAGAATTCTTGCTTGGAAACGTCATCAATGCTGTTGTTAGCCAAGTAATGTTATTACTAAGAGAGAGAAATTTACAGTTGATTCGTGATATACCTGAAGAAATCAAGACGTTGGCTGTTTATGGTGATCAGTTGAGGATTCAACAAGTCTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCGCCTTCTCCAGATGGGTGGGTAGAGATTCATGTACATCCAAGAATAAAACAAATCTCCGACGGGCTTACTCTTCTCCGTGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTGTTCCTCCTGAATTGGTTCAAGACATGTTCCATAGCAGTCGTTGGGTGACTCAAGAAGGCTTAGGTCTGAGCATGAGCCGGAAGATTCTAAAGTTAATGAATGGTGAAGTCCAATATATCAGGGAGGCAGAAAGATGCTATTTCTTCGTTCTTCTTGAACTACCTGTAACACGGAGAACTTACTCTAAAATCGTTAACTAG 3456 0.469 MASASRATNRVPHHQHQNQHQQQQQQQHPTASSSKRTVVHNTNDASISKAIAQYTEDARLHAVFEQSGESGKSFDYSHSVRHTSESVPEHQIIAYLLKIQRGGLIQPFGCMIAVDEPSFRILGYSENARDMLGISPQSVPTLERLPGSHEEALTIGTDVRSLFTASSSTLLERAFGAREITLLNPIWIHSRNSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKILCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPLRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINANDEEAVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVRCDGAALYYKGNYYPLGVTPTESQIRDIIEWLLAYHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITEGDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFRDAEHSNSKAVMHSHLADFELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLPVDEAMGKSLVHDLVYKEFEETVDKLLSRALRGEEDKNVEIKLKTFGPENQNGAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNAAMEKLTGWGRADVIGKMLVGEVFGSCCQLKGSDALTKFMIVLHNSLGGQDTDKFPFSFLDRHGKYVQAFLTANKRVNMDGQIIGAFCFLQIASPDLQQALKIQKQQEKNCYARMKELAYICQEIKNPLSGIRFTNSLLEATGLTDEQKQFLETSTACEKQMSKIIQDVDLASIEDGSMELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVHPRIKQISDGLTLLRAEFRMVCPGEGVPPELVQDMFHSSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFFVLLELPVTRRTYSKIVN* 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1292 1151 Pfam PAS fold 775 894 IPR013767 GO:0006355
Amo14g1292 1151 Pfam PAS fold 644 759 IPR013767 GO:0006355
Amo14g1292 1151 Gene3D - 897 979 - -
Amo14g1292 1151 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 248 416 IPR016132 -
Amo14g1292 1151 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 991 1139 IPR036890 -
Amo14g1292 1151 SMART pas_2 98 164 IPR000014 -
Amo14g1292 1151 SMART pas_2 774 844 IPR000014 -
Amo14g1292 1151 SMART pas_2 643 710 IPR000014 -
Amo14g1292 1151 Gene3D - 431 604 IPR043150 -
Amo14g1292 1151 PRINTS Phytochrome signature 737 754 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 PRINTS Phytochrome signature 456 476 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 PRINTS Phytochrome signature 541 560 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 PRINTS Phytochrome signature 574 592 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 PRINTS Phytochrome signature 663 678 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 PRINTS Phytochrome signature 757 777 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 PRINTS Phytochrome signature 163 185 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 PRINTS Phytochrome signature 263 282 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 PRINTS Phytochrome signature 644 660 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 PRINTS Phytochrome signature 348 369 IPR001294 GO:0006355|GO:0009584
Amo14g1292 1151 SMART HKATPase_4 1028 1143 IPR003594 -
Amo14g1292 1151 MobiDBLite consensus disorder prediction 1 38 - -
Amo14g1292 1151 Gene3D PAS domain 636 769 - -
Amo14g1292 1151 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1028 1135 IPR003594 -
Amo14g1292 1151 SUPERFAMILY PYP-like sensor domain (PAS domain) 789 892 IPR035965 -
Amo14g1292 1151 Gene3D - 229 587 IPR029016 -
Amo14g1292 1151 Pfam PAS fold 94 215 IPR013654 GO:0006355
Amo14g1292 1151 CDD PAS 652 759 IPR000014 -
Amo14g1292 1151 SUPERFAMILY PYP-like sensor domain (PAS domain) 99 216 IPR035965 -
Amo14g1292 1151 ProSiteProfiles PAS repeat profile. 641 712 IPR000014 -
Amo14g1292 1151 CDD HisKA 916 976 IPR003661 GO:0000155|GO:0007165
Amo14g1292 1151 Gene3D - 980 1145 IPR036890 -
Amo14g1292 1151 SUPERFAMILY GAF domain-like 228 423 - -
Amo14g1292 1151 CDD HATPase_Phy-like 1027 1139 IPR044767 -
Amo14g1292 1151 Gene3D PAS domain 98 351 - -
Amo14g1292 1151 PIRSF Phytochrome_conventional 23 1148 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Amo14g1292 1151 Gene3D PAS domain 788 896 - -
Amo14g1292 1151 ProSiteProfiles Histidine kinase domain profile. 923 1143 IPR005467 -
Amo14g1292 1151 ProSitePatterns Phytochrome chromophore attachment site signature. 348 357 IPR013516 -
Amo14g1292 1151 SUPERFAMILY PYP-like sensor domain (PAS domain) 648 756 IPR035965 -
Amo14g1292 1151 Pfam Phytochrome region 439 612 IPR013515 GO:0006355|GO:0009584
Amo14g1292 1151 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 907 978 IPR036097 GO:0000155|GO:0007165
Amo14g1292 1151 SMART HisKA_10 916 980 IPR003661 GO:0000155|GO:0007165
Amo14g1292 1151 SMART gaf_1 248 436 IPR003018 GO:0005515
Amo14g1292 1151 ProSiteProfiles PAS repeat profile. 775 827 IPR000014 -
Amo14g1292 1151 PANTHER PHYTOCHROME 14 1144 - -
Amo14g1292 1151 TIGRFAM sensory_box: PAS domain S-box protein 648 763 IPR000014 -
Amo14g1292 1151 PANTHER TWO-COMPONENT HISTIDINE KINASE 14 1144 - -
Amo14g1292 1151 SUPERFAMILY GAF domain-like 434 611 - -
Amo14g1292 1151 CDD PAS 786 894 IPR000014 -
Amo14g1292 1151 Pfam His Kinase A (phospho-acceptor) domain 920 980 IPR003661 GO:0000155|GO:0007165
Amo14g1292 1151 Pfam GAF domain 250 426 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1292 Amo-Chr14 20888043 20893891 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1292 5 1141 Histidine Kinase Gene Family AT4G16250 74.194 0.0 1769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1292 K12121 - gmx:100799831 2005.33