Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1249 ATGGTGGCGGAAGCGGAAATCATGTGTCAGCAGAGCATTCTGGTGCTGGATGTGAAGTATCATTTATGCGCAATGCAAGAGCACGCCGTTAAGGCTGGGATGTCTTCCATCGCCAATGCTATTCCTATCTTTAGCCAAGTTCGAGTCTTGCCTGAATCGATGGAATCGAGGAATGCAATTAGATTATTTTTTGAAGACACCAATATGCTGCAATCATATGATACAGATGCACTTTTCCTAAAATGGTTGGAGGATTCTCATAGGAAACCATTCTTAGGGGCAGACCTTGCCTTGGCTGGTGAACGGAGTGTTAATAATACTTATGGGACAACGGCATTGACTGTGCTTATACTTGGAAGGCATTTATTGGTTGCCAATGTTGGTGATTGTCGAGCAGTTCTTTGTAGGCGAGGAGTAGCAGTTGAGATGTCTCATGATCACAGACCGAGTTATTTACCAGAACAGAGGAGAGTGGAAGAGTTAGGTGGTTTCATCTATGATGGGTATCTCAATGGTGATCTTTCTGTCACCCGTTCCCTTGGTAATTGGAAGTTGAAGTATCCATTTGAGACTGTGTTGCCTCGTATTGTTGTTCCAGATATTCAAGTAGTTACATTGACAGAGAAGGACGAGTTCTTGATTATTGGGTGCGACGGCATTTGGGATGTAATGTCAAGCCAGGAAGTAGTTAGGTTCGTGCATCGACAATTGATAAGGCATGATGATCCACAACAATGTACCAAAGAACTAGTTAAGGAAGCATTGCGCCTCAATACAACAGATAATCTTACTGTGATTGGTATATGCTTATCCCCGGTGGAAAAGATTGTTGAATCTCTCCCACCGCATAGGCGAAGATTCAGAGCTTGCTCCCTATCTAAAGAGGCCAGATTGAGGAGCTTACTTGAAGGAAAATAA 918 0.4325 MVAEAEIMCQQSILVLDVKYHLCAMQEHAVKAGMSSIANAIPIFSQVRVLPESMESRNAIRLFFEDTNMLQSYDTDALFLKWLEDSHRKPFLGADLALAGERSVNNTYGTTALTVLILGRHLLVANVGDCRAVLCRRGVAVEMSHDHRPSYLPEQRRVEELGGFIYDGYLNGDLSVTRSLGNWKLKYPFETVLPRIVVPDIQVVTLTEKDEFLIIGCDGIWDVMSSQEVVRFVHRQLIRHDDPQQCTKELVKEALRLNTTDNLTVIGICLSPVEKIVESLPPHRRRFRACSLSKEARLRSLLEGK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1249 305 Pfam Protein phosphatase 2C 69 262 IPR001932 -
Amo14g1249 305 Gene3D - 49 275 IPR036457 -
Amo14g1249 305 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 52 - -
Amo14g1249 305 CDD PP2Cc 74 270 IPR001932 -
Amo14g1249 305 ProSiteProfiles PPM-type phosphatase domain profile. 1 270 IPR001932 -
Amo14g1249 305 SMART PP2C_4 5 268 IPR001932 -
Amo14g1249 305 SUPERFAMILY PP2C-like 74 272 IPR036457 -
Amo14g1249 305 PANTHER PROTEIN PHOSPHATASE 2C 56 294 IPR015655 GO:0004722|GO:0006470
Amo14g1249 305 PANTHER PROTEIN PHOSPHATASE 2C 1 52 IPR015655 GO:0004722|GO:0006470
Amo14g1249 305 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 56 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1249 Amo-Chr14 19972624 19983246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1249 58 305 PP2C-type Phosphatase Gene Family AT1G48040 56.972 8.11e-92 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1249 K14803 - gmx:100798957 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3360 01 106025738 106027392 Amo14g1249 14 19972624 19983246 PCT
Amo14g1249 14 19972624 19983246 Amo01g3360 01 106025738 106027392 PCT