Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1205 ATGGCATTTAGATACTTGTTTGCCTTCTTGTTGGCTTTATGCCTCTCACACCCTCCTCATTCTGTTCTTGTTGCACAAAATTTGCCATACAAAGCTGTGAATCTAGGAAATTGGTTGCTTGCTGAGGGATGGATGAAACCTTCTCTCTTTGATGGAAATGCCAACAAAGGATGGAACTCAAGTGCAGCTAATGCCACTAAGTTCCAGAAATATCTCGCCGCAGAAAATGGAGGAGGAGCTGATCTTGTTGCCAACTGTACTTCAGCTTCTGCTTCAGGTTGGGAAACATTCAAGTTTGAATGGGCTTGGCAGCACCCTGTCGAATCCTTGGCCGTAAGGAAGGCAGCTACAAATTTTAAATCCCTTTCGGGAGTTGCCAATAAGATCAAACTCGCATACACAATGCTCACCCTACCATCTTGGCAGAGAAATATAGACTTGGGAAAAGCCAACCACAACTTGAAATCTGTTTTGGCAACAACAAACATGAAGAAGAGAAAAAATGGAGGATTCAGGAGTATGTGGAGAAGGGAAAAGAAAACTGAAACCCAGGCACATGTTATAAGAACAAAGAGTGTTCAATTTATGCCATTCAATTTGTCATTTTTCCTCACATTAAGTGCGGTTATGTGGTTTGCATATGGTTTATTTCTCAGTGATATATGTATTGCCATAAGTACACCAACTTTATCACTACCAAATGTGTTGGATTTTGCACTTGGGGTACTTCAGATGCTGCTATATGCCATATACAGAAATGCTGCTATATACCATATAAAAAAGCTTACTATTTGGGACACAGCACTCACATTGTCCATGGGAAGTGGTAGTAATAAGGATTCATCAACAACCAGCTGTGACAATAACAGCATTATTGAAGCCCCACCTTCTAATGGAAGAACTCTAGATACCTTTGGCCAGAGAACTTCAATATACCGTGGCGTAACAAGACATAGATGGACCGGAAGATATAAAGCTCATCTTTGGAATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGGTGGATATGATAAAGAAGATAAAGCAGCTAGGGCTTATGATTTGGCTGCATTAAAGTATTGGGGGACATCCACTACTACCAATTTTCCT 1122 0.4082 MAFRYLFAFLLALCLSHPPHSVLVAQNLPYKAVNLGNWLLAEGWMKPSLFDGNANKGWNSSAANATKFQKYLAAENGGGADLVANCTSASASGWETFKFEWAWQHPVESLAVRKAATNFKSLSGVANKIKLAYTMLTLPSWQRNIDLGKANHNLKSVLATTNMKKRKNGGFRSMWRREKKTETQAHVIRTKSVQFMPFNLSFFLTLSAVMWFAYGLFLSDICIAISTPTLSLPNVLDFALGVLQMLLYAIYRNAAIYHIKKLTIWDTALTLSMGSGSNKDSSTTSCDNNSIIEAPPSNGRTLDTFGQRTSIYRGVTRHRWTGRYKAHLWNNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1205 374 ProSiteProfiles AP2/ERF domain profile. 311 374 IPR001471 GO:0003700|GO:0006355
Amo14g1205 374 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 267 374 - -
Amo14g1205 374 CDD AP2 310 374 IPR001471 GO:0003700|GO:0006355
Amo14g1205 374 Gene3D - 183 259 - -
Amo14g1205 374 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 267 374 - -
Amo14g1205 374 Pfam AP2 domain 311 366 IPR001471 GO:0003700|GO:0006355
Amo14g1205 374 SUPERFAMILY (Trans)glycosidases 27 60 IPR017853 -
Amo14g1205 374 Gene3D Glycosidases 23 95 - -
Amo14g1205 374 SUPERFAMILY DNA-binding domain 310 374 IPR016177 GO:0003677
Amo14g1205 374 Pfam Sugar efflux transporter for intercellular exchange 185 253 IPR004316 GO:0016021
Amo14g1205 374 Gene3D AP2/ERF domain 311 374 IPR036955 GO:0003700|GO:0006355
Amo14g1205 374 SMART rav1_2 311 374 IPR001471 GO:0003700|GO:0006355
Amo14g1205 374 PRINTS Ethylene responsive element binding protein signature 356 374 IPR001471 GO:0003700|GO:0006355
Amo14g1205 374 PRINTS Ethylene responsive element binding protein signature 312 323 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1205 Amo-Chr14 19212155 19215327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1205 268 374 AP2-EREBP Transcription Factor Family AT1G51190 66.406 2.52e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo14g1205 MtN3_slv 3.1e-12 CL0141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1205 K09285 - fve:101291999 176.022