Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1136 ATGAGTTCTTCAGTGACAGGAGCTGCTGGATCTGGTGATGATGGAAGAAGTAGTAACAACAAAGGAAAAAGACCTGCCTACAAACGCCTTACTTCTGCTCAAACAGCTAAACTTGAAAAGTACATTATTGATTGTCCTCATCCTGATGAAGCTCAACGAAGGCAACTTGCTGAGGAGGTTGGGATAGAGCCAAAACAAGTCAAGTTTTGGTTTCAGAATAAGAGAACTCAAATAAAGAATCAACATGAGCGAGCAGATAACAATGCTCTTCGGGCTGAGAATGAAAGGATACAAAACGAGAATCTCCTAATGAAAGAGGCACTTAATAATATACTTTGCCCTTCTTGTGGGGGCCCACCTGCCGCTGCATGGGAAAATATCAAACATTCTTTCAAGCAGCTAAACGCAATTCCGAACAACATAGACATTGCGGGGTCATCATCAACAACACCACTGTATGATTTCTCAGTTGCAAATGGAACCTTGTTGAACCAACAACAAGGGGTTAGCATCAATGATGTTGTTGCAGGCCCTTCTTCTTCACTACTTCATCATCAGAACTATGTTCCACCACCAATTGTTGCTGATAACAATGATAATGGGGAACAAGGTGTGGCAGTAATGGAGGTTGCATTGGCCTCCGAGGTTGCGGCTACCGCCCTGGATGAACTGCTTAGGCTTATTCGCCTCAATGAACCGTTCTGGGTTGGTTCTGCTTTTGATGGGAAGCTTGTGCTTCACGGTGAAAGCTACGAAAAGATGTTCCCTAGGGTTTATCAATTCAACGATGGAAACTCTCGTGTTGAATCATCAAAGGAATCAGGGATTGTCAACATAAGTGGGATTCAACTGGTTGATTTGTTTCTTGATTCGGAAAAATGGGCGAATGCTTTTCCAACAATAGTTACAAAAGCGCAGACACTTGAAGTGTTTGAAATTGGATTGCCAGAAAGTCGAAGCGGAGCCTTACAATTGATGTATGAAGAGATGCACGGGTTTTCACCATTGGTGGCATCTCGTGAATTCCAATTCCTCCGGCACTGCCATCAACTGGAGCCTGGATCGTGGATCATAACAGATGTGTCTTTCGATTCGCTTCGAAACTACCCCTTTCGCCTTCCTCGCTCTCGCTCTTGGAGACGTCCCTCTGGATGCTTGATCCAGGAACTCCCCAACTCCACTTCTTGCATGGTTACTTGGATCGAACACGTGGAAGTGGATGATAAGATTCAGACTCACCGGCTTTACAGAGATCTTGTTAGCACCAATGCTGCATATGGAGCACAGAGATGGATTATGGAACTTCAAAGAATGTGCCTCAGATCTATGAGCTATGCTCTTGAAAACATACCTGATCATGAATATGGTGGAGTGATAAATACAAATGAAGGAAGGAGGAGTGTGATGAGGCTAGGTCAGAGGCTGGTGAGGCTATTTAGTGAGAATTTGAACATGAGTGGAAAGGTGGAGTTTCCGCAGTTGAGTGTGGAGTACAACAGTGGGGTGAGGATCTCAGCTCGAAGATGCACAGAGAAAGGGCAGCCAAATGGGACCATTGTGATTGCTGCAACGTCTCTTTGGCTGCCTCTCCATTACCACACAGTGTTTGAATTCTTGACTGATATCAACAAACGCTCTCAGTGGGATGTTCTTTTCTGCACAACTCCAGTCCACTACATTGCACACATCTCAAATGGAACTCATCCTGCCAACAATACATCAATTATCCAGCCATTCATGTCAAGCGAGAACAATGCCGTTATAATTCAAGAAAGCTTCATAGACCCAGTGGGATCATCTTACATAGTGTATGCTCCAGCTGACGTGGAAGCCATCCACGTCGCCATTAGCGGCGAGGACTCTTCCACCATCCCTATCCTTCCCTCAGGATTTGTTGTGTGTGGAGATGGCAGAGCATCAATGATGAGCAACAGCACCATTATTGCACCATCGGTTCTTGGTGGAGTTGGAAGCTATGGCTATCAGCATAGATCAGAAGGAGGGTCACTGTTGACGGTGGCATTCCAAATTCTGGTTAATACCATCACTTGTGGACCCAACCTAGTGAATATGGAATCTGTGGATTCTATTAACACCCTTTTGACTTCAACCGTCCAGAAGATCAAGGACGCTTTGAACTGCAATGCCTTGCACTGA 2157 0.4502 MSSSVTGAAGSGDDGRSSNNKGKRPAYKRLTSAQTAKLEKYIIDCPHPDEAQRRQLAEEVGIEPKQVKFWFQNKRTQIKNQHERADNNALRAENERIQNENLLMKEALNNILCPSCGGPPAAAWENIKHSFKQLNAIPNNIDIAGSSSTTPLYDFSVANGTLLNQQQGVSINDVVAGPSSSLLHHQNYVPPPIVADNNDNGEQGVAVMEVALASEVAATALDELLRLIRLNEPFWVGSAFDGKLVLHGESYEKMFPRVYQFNDGNSRVESSKESGIVNISGIQLVDLFLDSEKWANAFPTIVTKAQTLEVFEIGLPESRSGALQLMYEEMHGFSPLVASREFQFLRHCHQLEPGSWIITDVSFDSLRNYPFRLPRSRSWRRPSGCLIQELPNSTSCMVTWIEHVEVDDKIQTHRLYRDLVSTNAAYGAQRWIMELQRMCLRSMSYALENIPDHEYGGVINTNEGRRSVMRLGQRLVRLFSENLNMSGKVEFPQLSVEYNSGVRISARRCTEKGQPNGTIVIAATSLWLPLHYHTVFEFLTDINKRSQWDVLFCTTPVHYIAHISNGTHPANNTSIIQPFMSSENNAVIIQESFIDPVGSSYIVYAPADVEAIHVAISGEDSSTIPILPSGFVVCGDGRASMMSNSTIIAPSVLGGVGSYGYQHRSEGGSLLTVAFQILVNTITCGPNLVNMESVDSINTLLTSTVQKIKDALNCNALH* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1136 718 MobiDBLite consensus disorder prediction 1 30 - -
Amo14g1136 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 19 714 - -
Amo14g1136 718 ProSiteProfiles START domain profile. 206 444 IPR002913 GO:0008289
Amo14g1136 718 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Amo14g1136 718 MobiDBLite consensus disorder prediction 1 16 - -
Amo14g1136 718 SMART START_1 215 441 IPR002913 GO:0008289
Amo14g1136 718 Pfam START domain 215 440 IPR002913 GO:0008289
Amo14g1136 718 SUPERFAMILY Homeodomain-like 17 86 IPR009057 -
Amo14g1136 718 Pfam Homeodomain 27 79 IPR001356 GO:0003677
Amo14g1136 718 SMART HOX_1 23 85 IPR001356 GO:0003677
Amo14g1136 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 714 IPR042160 -
Amo14g1136 718 Coils Coil 75 110 - -
Amo14g1136 718 CDD START_ArGLABRA2_like 211 439 - -
Amo14g1136 718 SUPERFAMILY Bet v1-like 213 440 - -
Amo14g1136 718 CDD homeodomain 21 82 IPR001356 GO:0003677
Amo14g1136 718 Gene3D - 249 429 IPR023393 -
Amo14g1136 718 Gene3D - 11 98 - -
Amo14g1136 718 SUPERFAMILY Bet v1-like 499 709 - -
Amo14g1136 718 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1136 Amo-Chr14 17731313 17736446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1136 23 713 Homeobox Transcription Factor Family AT1G73360 40.420 2.27e-169 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo14g1136 START 9e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1136 K09338 - gmx:100795075 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1136 14 17731313 17736446 Amo04g0203 04 3195380 3200513 hybridization