LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo14g1112	ATGAGGAATTCCCGCGTGGAACTTGGGAGGCCTGCCTCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTATTTGTTTGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTTCTCATATATCAAAGATTTTATCTGTGACTTTGGATGAATGGACAGAAGAAGAAATTGATTCAATGATTGAAGTTGGGGGGAATGCTGCTGCTAATTCAATATATGAGGCTTATATTCCAGAAGGACATAAAAAACCTGAACCAGATGCCAGCCATGAACAGCGTGCAAATTTTATAGTGTCAAAATATGAGAATCAAGAATTTTTGAAACCTGGCTTGCGCATTGTGTCTGGGAAAGGCGGTCCAAATTCAAACTCCGCAAAAAGTCGCATCGATGGTGGTAGTTCAAAGAGAACGGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTARAGGCACCAATTTAGCTATTAGAGATATAAAGACAAGTGATCCATATGTTGTTTTGAACCTTGGCACACAGACTTCCCAGACAAGGGTAATATCRAGTAACTTGAATCCAGTCTGGAATGAAGAAATTATGTTGTCYGTTCCTGAAATATATGGACCAATAAAACTGAAAGTGTTCGATTATGACACATTTTCTGCTGACGACATAATGGGAGAAGCAGACATTGACATTCAGCCCCTGATATCATCTGCCATGGCATGTGGTAATGCTGCAATGTTTGCCAATATGCAGATAGGAAAGTGGTTAAAAGCTGATGGGAATGCACTTATTGAAGATAGTATAGTCAATATTGTTGATGGGAAGGTTATACAGGCCATGACACTGAAGCTCCAGAATGTTGAATGTGGAGAAATAGACCTAGAAATTGAGTGGATYCCTCTTGATCAATAG	906	0.3974	MRNSRVELGRPASDPKWASANIGVFVCLKCCGVHRSLGSHISKILSVTLDEWTEEEIDSMIEVGGNAAANSIYEAYIPEGHKKPEPDASHEQRANFIVSKYENQEFLKPGLRIVSGKGGPNSNSAKSRIDGGSSKRTEGMVEFIGMLKVKVIXGTNLAIRDIKTSDPYVVLNLGTQTSQTRVISSNLNPVWNEEIMLSVPEIYGPIKLKVFDYDTFSADDIMGEADIDIQPLISSAMACGNAAMFANMQIGKWLKADGNALIEDSIVNIVDGKVIQAMTLKLQNVECGEIDLEIEWIPLDQ*	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo14g1112	301	SUPERFAMILY	ArfGap/RecO-like zinc finger	12	108	IPR037278	-
	Amo14g1112	301	CDD	ArfGap	12	101	-	-
	Amo14g1112	301	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10	11	301	-	-
	Amo14g1112	301	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	11	301	IPR044518	GO:0005096\|GO:0005543
	Amo14g1112	301	ProSiteProfiles	C2 domain profile.	130	242	IPR000008	-
	Amo14g1112	301	Pfam	C2 domain	146	238	IPR000008	-
	Amo14g1112	301	Pfam	Putative GTPase activating protein for Arf	12	108	IPR001164	GO:0005096
	Amo14g1112	301	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	143	299	IPR035892	-
	Amo14g1112	301	CDD	C2_ArfGAP	144	288	-	-
	Amo14g1112	301	PRINTS	HIV Rev interacting protein signature	4	23	IPR001164	GO:0005096
	Amo14g1112	301	PRINTS	HIV Rev interacting protein signature	23	40	IPR001164	GO:0005096
	Amo14g1112	301	PRINTS	HIV Rev interacting protein signature	44	65	IPR001164	GO:0005096
	Amo14g1112	301	MobiDBLite	consensus disorder prediction	111	133	-	-
	Amo14g1112	301	SMART	arf_gap_3	2	114	IPR001164	GO:0005096
	Amo14g1112	301	SMART	C2_3c	146	241	IPR000008	-
	Amo14g1112	301	Gene3D	C2 domain	143	301	IPR035892	-
	Amo14g1112	301	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	1	106	IPR001164	GO:0005096
	Amo14g1112	301	Gene3D	Arf GTPase activating protein	9	111	IPR038508	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo14g1112	Amo-Chr14	17349319	17353290	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo14g1112	12	301	C2H2 Transcription Factor Family	AT4G05330	69.536	2.80e-154	433

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo14g1112	K12486		-	gmx:100810806	456.447