Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1107 ATGAATCCTGTTGATCATGGTGTTGGTAAAGTAATGAAAAAGGAGTATCTAGGAGAAGGGTATTGTTCCTTTTCATATCCAATGGTGGTGGATATTCCTCCTCCTCCTCTGCCGCCGCCGCATCCAATGGAGGGGCTTAATGAGAGTGGTCATCCGCCATTCCTGACAAAGACATATGACATCGTTGAAGACCCTTCGACAAATCACATAGTTTTTTGGAGCAAAGGAAACAACAGCTTCGTTGTGTGGGATCCTTAA 258 0.4457 MNPVDHGVGKVMKKEYLGEGYCSFSYPMVVDIPPPPLPPPHPMEGLNESGHPPFLTKTYDIVEDPSTNHIVFWSKGNNSFVVWDP* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1107 85 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 32 85 - -
Amo14g1107 85 Pfam HSF-type DNA-binding 54 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo14g1107 85 Gene3D - 46 85 IPR036388 -
Amo14g1107 85 SUPERFAMILY "Winged helix" DNA-binding domain 50 85 IPR036390 -
Amo14g1107 85 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 85 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1107 Amo-Chr14 17288162 17288419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1107 34 85 HSF AT3G22830 71.154 1.45e-23 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo14g1107 HSF_DNA-bind 4.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1107 K09419 - gmx:100811941 95.5153