Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo14g1097 | ATGAGGAATTCCCGCGTGGAACTTGGGAGGCCTGCCTCAGGTAAAAGAAGGTTGAAAGATTTATTGCTTCAGCAGGATAATCGTGTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTATTTGTTTGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTTCTCATATATCAAAGATTTTATCTGTGACTTTGGATGAATGGACAGAAGAAGAAATTGATTCAATGATTGAAGTTGGGGGGAATGCTGCTGCTAATTCAATATATGAGGCTTATATTCCAGAAGGACATAAAAAACCTGAACCAGATGCCAGCCATGAACAGCGTGCAAATTTTATAGTGTCAAAATATGAGAATCAAGAATTTTTGAAACCTGGCTTGCGCATTGTGTCTGGGAAAGGCGGTCCAAATTCAAACTCCGCAAAAAGTCGCATCGATGGTGGTAGTTCAAAGAGAACGGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACCAATTTAGCTATTAGAGATATAAAGACAAGTGATCCATATGTTGTTTTGAACCTTGGCACACAGACTTCCCAGACAAGGGTAATATCAAGTAACTTGAATCCAGTCTGGAATGAAGAAATTATGTTGTCCGTTCCTGAAATATATGGACCAATAAAACTGAAAGTGTTCGATTATGACACATTTTCTGCTGACGACATAATGGGAGAAGCAGACATTGACATTCAGCCCCTGATATCATCTGCCATGGCATGTGGTAATGCTGCAATGTTTGCCAATATGCAGATAGGAAAGTGGTTAAAAGCTGATGGGAATGCACTTATTGAAGATAGTATAGTCAATATTGTTGATGGGAAGGTTATACAGGCCATGACACTGAAGCTCCAGAATGTTGAATGTGGAGAAATAGACCTAGAAATTGAGTGGATYCCTCTTGATCAATAG | 975 | 0.3969 | MRNSRVELGRPASGKRRLKDLLLQQDNRVCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSHISKILSVTLDEWTEEEIDSMIEVGGNAAANSIYEAYIPEGHKKPEPDASHEQRANFIVSKYENQEFLKPGLRIVSGKGGPNSNSAKSRIDGGSSKRTEGMVEFIGMLKVKVIKGTNLAIRDIKTSDPYVVLNLGTQTSQTRVISSNLNPVWNEEIMLSVPEIYGPIKLKVFDYDTFSADDIMGEADIDIQPLISSAMACGNAAMFANMQIGKWLKADGNALIEDSIVNIVDGKVIQAMTLKLQNVECGEIDLEIEWIPLDQ* | 325 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo14g1097 | 324 | Gene3D | Arf GTPase activating protein | 4 | 134 | IPR038508 | - | |
| Amo14g1097 | 324 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 | 8 | 324 | - | - | |
| Amo14g1097 | 324 | Pfam | C2 domain | 169 | 261 | IPR000008 | - | |
| Amo14g1097 | 324 | SMART | arf_gap_3 | 16 | 137 | IPR001164 | GO:0005096 | |
| Amo14g1097 | 324 | MobiDBLite | consensus disorder prediction | 134 | 157 | - | - | |
| Amo14g1097 | 324 | PRINTS | HIV Rev interacting protein signature | 27 | 46 | IPR001164 | GO:0005096 | |
| Amo14g1097 | 324 | PRINTS | HIV Rev interacting protein signature | 46 | 63 | IPR001164 | GO:0005096 | |
| Amo14g1097 | 324 | PRINTS | HIV Rev interacting protein signature | 67 | 88 | IPR001164 | GO:0005096 | |
| Amo14g1097 | 324 | Pfam | Putative GTPase activating protein for Arf | 16 | 131 | IPR001164 | GO:0005096 | |
| Amo14g1097 | 324 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 8 | 324 | IPR044518 | GO:0005096|GO:0005543 | |
| Amo14g1097 | 324 | CDD | ArfGap | 18 | 124 | - | - | |
| Amo14g1097 | 324 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 129 | IPR001164 | GO:0005096 | |
| Amo14g1097 | 324 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 166 | 322 | IPR035892 | - | |
| Amo14g1097 | 324 | Gene3D | C2 domain | 166 | 324 | IPR035892 | - | |
| Amo14g1097 | 324 | ProSiteProfiles | C2 domain profile. | 153 | 265 | IPR000008 | - | |
| Amo14g1097 | 324 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 15 | 131 | IPR037278 | - | |
| Amo14g1097 | 324 | CDD | C2_ArfGAP | 167 | 311 | - | - | |
| Amo14g1097 | 324 | SMART | C2_3c | 169 | 264 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo14g1097 | Amo-Chr14 | 17117344 | 17122892 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo14g1097 | 1 | 324 | C2H2 Transcription Factor Family | AT4G21160 | 68.249 | 6.44e-174 | 484 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo14g1097 | K12486 | - | gmx:100810806 | 509.22 |