Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1000 ATGGCTAATTCAGCTGAACCCTCTTCGTCTTTGAGCTTTACATTGTCTTCGCACTTATCGAATGGCTCTGTTAGCCACAACATATGTCCCTCCTTCGGTGCTGATCCTGGACATAACCTTGATGTTATCAGTTTGAGTAAGCTTAGCTCCAATTTGGAGCAGCTTTTGATTGATCCTGCTTGTGACTATAGTGATGCCGAGATCATTGTGGAAGAAATTCCGGTCGGTGTTCATCAATGCATTCTGGCCTCTAGAAGTAAGTTCTTCCATGAATTGTTCAAGAGTGAAAAAGGATCTTCAGATAAAGAAGGGAAATTGAAGTACTCCATGAGTGATTTATTGCCTTATGGCAATGTTGGATATGAAGCTTTTCAAATTTTCCTTGGTTATGTGTATACCGGTAAACTCAAGCCTTCTCCAATGGAGGTGTCAACATGTGTTGACAATGTGTGTGCACATGCTGCTTGTAGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCATCTTCCATTTTTCAAATACCGGAGCTGGTATCGCTTTTCCAGCGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGATGTCATCCCAATCCTCATGGTTGCTTTCCATTGTAAATTGARTCAGCTTGTCACTCAGTGTGTCGACAGGGTGGTACGCTCAGACATTGACCAGATCTCAATCGAGAAGGAGCTTCCCTATGAGCTCGTGGAAAAGGTTAAGTTGCTCCGCCAAAACCAACAGCAAGATATGGAAACCGATGCTTCTGTAGATGTTCCTGTAGTTGATCCTTTGTGTCTAAAACGGATCACTAGAATACATAAAGCATTGGACTCGGATGATGTTGAGCTTGTTAAACTTCTTTTAAACGAGTCAGACATTACATTAGATAAAGCCAATGCTCTCCATTATGCTACAGCATACTGTGATCCCAAGGTTGTTTCYGAGGTACTTAGTTTGGGTCTGGCTGATGTAAAYCTTCGGAATTCTCGGGGGTACTCGGTGCTTCATATAGCCGCCATGCGTAAAGAACCTTCTATTATAGTATCACTTCTCTCAAAAGGAGCTTGTGCATCGGATTTGACTTCGGATGGCCAGAGTGCTGTTAGTATTTGCAGGAGGTTGACAAGGCCAAAGGATTATCATGCGAAAACAGAACAGGGGAAGGAGACAAACAAAGATAGAATATGCATCGATGTTCTTGAAAGAGAAATGAGAAGGAATCCATTGGCTGGGGATGCTACAACTTCTTCCCATACAATGGCCGACGATCTACACATGAAGCTACTATACCTGGAGAACAGAGTGGCATTTGCAAGATTGTTCTTCCCTTCAGAAGCAAAACTAGCCATGGACATYGCTCATGCRGAGACAACTTCCGAGTTYGCTGGTCTTTCTGCTTCGAAAGGTTCAAATGGCAACCTAAGGGAAGTAGATCTCAACGAGACACCGATCGTGCAAAACAAAAGACTTCTTTCTAGGATGGAAGCCCTTATGAAAACAGTCGAGATGGGGAGGCGCTACTTTCCGCATTGCTCGGAAGTACTGGATAAGTTCATGGAGGATGACCTCCCCGACTTGTTCTACCTCGAGAAGGGAACCCAAGAAGAGCAGCGAATCAAGAGGACGCGCTTCATGGAGCTCAAAGACGATGTCCACAAGGCTTTCACCAAGGACAAGGCCGAGTTTAGCCGCTCCGGAATTTCGTCCTCTTCATCCTCATCATCCCTCAGAGATTCTGTACATTACAACAAGGCTAGAAAAGTGTGA 1779 0.4407 MANSAEPSSSLSFTLSSHLSNGSVSHNICPSFGADPGHNLDVISLSKLSSNLEQLLIDPACDYSDAEIIVEEIPVGVHQCILASRSKFFHELFKSEKGSSDKEGKLKYSMSDLLPYGNVGYEAFQIFLGYVYTGKLKPSPMEVSTCVDNVCAHAACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVIPILMVAFHCKLXQLVTQCVDRVVRSDIDQISIEKELPYELVEKVKLLRQNQQQDMETDASVDVPVVDPLCLKRITRIHKALDSDDVELVKLLLNESDITLDKANALHYATAYCDPKVVSEVLSLGLADVNLRNSRGYSVLHIAAMRKEPSIIVSLLSKGACASDLTSDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPLAGDATTSSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSASKGSNGNLREVDLNETPIVQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRTRFMELKDDVHKAFTKDKAEFSRSGISSSSSSSSLRDSVHYNKARKV* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1000 592 SUPERFAMILY POZ domain 48 188 IPR011333 -
Amo14g1000 592 SMART BTB_4 64 190 IPR000210 GO:0005515
Amo14g1000 592 PANTHER REGULATORY PROTEIN NPR3 10 579 IPR044292 GO:0009862|GO:2000022|GO:2000031
Amo14g1000 592 ProSiteProfiles Ankyrin repeat region circular profile. 334 359 - -
Amo14g1000 592 SMART ANK_2a 300 330 IPR002110 GO:0005515
Amo14g1000 592 SMART ANK_2a 271 299 IPR002110 GO:0005515
Amo14g1000 592 SMART ANK_2a 334 366 IPR002110 GO:0005515
Amo14g1000 592 CDD BTB_POZ_NPR_plant 47 190 - -
Amo14g1000 592 ProSiteProfiles Ankyrin repeat profile. 334 359 IPR002110 GO:0005515
Amo14g1000 592 Pfam Ankyrin repeats (3 copies) 277 359 IPR002110 GO:0005515
Amo14g1000 592 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Amo14g1000 592 SUPERFAMILY Ankyrin repeat 269 377 IPR036770 -
Amo14g1000 592 Gene3D - 269 408 IPR036770 -
Amo14g1000 592 Pfam BTB/POZ domain 62 178 IPR000210 GO:0005515
Amo14g1000 592 MobiDBLite consensus disorder prediction 568 588 - -
Amo14g1000 592 MobiDBLite consensus disorder prediction 568 583 - -
Amo14g1000 592 PANTHER REGULATORY PROTEIN NPR3 10 579 - -
Amo14g1000 592 Pfam NPR1/NIM1 like defence protein C terminal 376 578 IPR021094 -
Amo14g1000 592 Gene3D Potassium Channel Kv1.1; Chain A 39 222 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1000 Amo-Chr14 14690058 14694367 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo14g1000 NPR1_like_C 1.4e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1000 K14508 - gmx:100217338 1003.82