Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0888 ATGGGGAGAAGAAATGGGGTAAGGGCACTGCAAGGAACCCTTCGCGGTCGGTTGGAGTCGTGCAAGTCCAGTTACTCCACTGTCGATGATATCGTTAACCACCTACGCTCCACTTACCCCGATTACCAACGCACCAAGCACCAAGCCCTCACTCGATTAGTTCAACAAGTCCTCGAGCCACGTTCCAAACACGCGACCAAAGTGTCTGCCAAGCGCAGCGGCCACAATGGCGACGAAGAAAGTGGTCGAAGCGCGCTCCGAAAGAGACAGAAGAGAGTCGACGAAGGTGAAGAGAGGTTGCAGAAGATGGAGGCTTTGCACCTGCGAAAAAGGATGCAGGGCGAAAAAGAAACTCAGGGTTCTGCATCTTCGTCCTCTGCTTCAAGCTTGAGCCCGTCTGGAAGCAGCGGCGGTGAGGATGATGATGATGGCACAGTGTCTGTGTCGACATCGGAGGACGCAATTTACCGGGAGAAGTACGAACCTGCTGTCGATCTGATGAAGACGATGCTGCGAAAAGCGTATACTCCCACGAAGGATGATAGTGTGAGGAAGATGAAACACGTGGTGCAAGATAAGAACGTTGAAATGGAGGTCGCCAATAGTGACAAGGCTACTAATGAGATTTGTGCTAAGAATGGAGGCGGAGGCAAAGTGAAGGCGGCGTCGAATTTGAAGGGTTCCGTTTCAAATGGCGACCATGGTGGTGGCAGCTTTGTTAAGGTGAAGGCAGGACCTAGGTTAAGTGATTTGGGTGGGATGAATGATCTTCTGGAAAAGCTGGTGGAAGAAGTGATTGTTCCATGGTATTATCCTGAGCTTCCAAGAAAGCTATGTCGTACTCCTACTACTGGAATCTTGCTGCATGGGCCACCCGGTTGTGGCAAGACCACACTGGCTCACGCCATAGCTAATGAGACCCGTGTTCCCTTCTATCCGATATCAGCTACTGAGTTGGTTTCTGGAGTATCGGGTGCATCTGAAGAGAATATCAGAGAGCTTTTCGCCAAAGCGTATCGGACTGCCCCATCAATCGTCTTCATTGATGAGATTGATTCAATTGCTTCGAAAAGAGACAATTTACAGCGAGAGATGGAGAAAAGAATTGTTACACAGTTACTTGCCAGCATGGATCAATCAAGTAGGTGTATGCAATCTGCTAATGATTCGGACAGTTCTAATGTTCATCCTAAATATGTTCTTGTAATTGGAGCTACAAATAGGCCTGATGCTCTTGACTCAGCCTTGAGAAGGCCTGGGCGGTTTGATCGGGAGTTTGTTCTTGGCATTCCTGATGAATCGTCGAGAGAACATATCCTCTCCTTGCTCACTCGCAATCTTCCACTTCAGGGTTCATTGGATCTAAAAGACATAGCCAGGTCTACACCAGGATATGTCGGTGCTGATTTGGCAGCCTTGATTACGGGGGCTAGTAATTTGGCCATGAAGAGAATTATTTCCGAAAGGATAGGGGAGCATGAGACAAGTGATCTTGGAGACTGGTGGAGGGAACCTTGGCCTCTTGAAGATATGGATAAGCTTGTCTACACAATGTCTGATTTCCAGGAAGCTTTGAAAATTGTGCAACCTTCATTAAGAAGAGAGGGCTTCTCATCCATTCCCGATGAGAAATGGGAAGATGTTGGCGGCCTTGATTATTTAAGGAAGGAGTTTAAAAATAGAATAATAAGGCCGATAAAATATCCTGAGGTTTATCAGGCATTTAGGTTTGCAAATCAGACGGGAATTTTACTTTTTGGGCCCCCTGGTTGTGGTAAAACTCTTATTGCCAAAGCTGTTGCCAATGAGGCAGGAGCTAATTTCATTCATGTTAAGGGGCCGGAGCTCATAAATAAATTTGTTGGAGAAAGTGAGAGAGAAATTCGACTAACGTTTAGTCGTGCAAGGGCATGTTCACCCTGTATATTATTTTTTGATGAGGTGGATGCTTTGTCAACCAAACGTGGTGCAGAAGGTGGATCAGGCATTGAGCGAGTGGTGAATCAGTTACTAGTTGAGCTAGATGGTGCGGGGCAACGCCAAAATGTTTTTGTCATTGGTGCAACAAATAGGCCTGATAGGATGGATGAGGCTCTCCTCCGTCCTGGTAGACTTGGTAAACAACTTTATGTTCCTCTGCCAAGCACTGACCAGCGGTTTTCAATATTGAAAGCTCTTGCAAGGAAGGAACCTCTTGATCCTACTGTGGATCTGAGAGCCATAGCTGAAGCGTGTGAAAATTTTAGTGGCGCAGACCTTGCTGAATTGGTGGATGAAGCAACTCGTGCTGCTCTTGATGAGAAATATACCGCAGTTGAAGAAGGTTTGACCTCAGTTGAAGCCTCTAGTGATACTTATACTTGCAAGCCAAGACATTTTGATATAGCACTTAGTAAGGTCTTTCCCTCTGTGTCTCCCGCGAAAAGGCGTAGGTATGAGCGCTTGGCAAAGCGTTTTAAAGCATCATGA 2469 0.4674 MGRRNGVRALQGTLRGRLESCKSSYSTVDDIVNHLRSTYPDYQRTKHQALTRLVQQVLEPRSKHATKVSAKRSGHNGDEESGRSALRKRQKRVDEGEERLQKMEALHLRKRMQGEKETQGSASSSSASSLSPSGSSGGEDDDDGTVSVSTSEDAIYREKYEPAVDLMKTMLRKAYTPTKDDSVRKMKHVVQDKNVEMEVANSDKATNEICAKNGGGGKVKAASNLKGSVSNGDHGGGSFVKVKAGPRLSDLGGMNDLLEKLVEEVIVPWYYPELPRKLCRTPTTGILLHGPPGCGKTTLAHAIANETRVPFYPISATELVSGVSGASEENIRELFAKAYRTAPSIVFIDEIDSIASKRDNLQREMEKRIVTQLLASMDQSSRCMQSANDSDSSNVHPKYVLVIGATNRPDALDSALRRPGRFDREFVLGIPDESSREHILSLLTRNLPLQGSLDLKDIARSTPGYVGADLAALITGASNLAMKRIISERIGEHETSDLGDWWREPWPLEDMDKLVYTMSDFQEALKIVQPSLRREGFSSIPDEKWEDVGGLDYLRKEFKNRIIRPIKYPEVYQAFRFANQTGILLFGPPGCGKTLIAKAVANEAGANFIHVKGPELINKFVGESEREIRLTFSRARACSPCILFFDEVDALSTKRGAEGGSGIERVVNQLLVELDGAGQRQNVFVIGATNRPDRMDEALLRPGRLGKQLYVPLPSTDQRFSILKALARKEPLDPTVDLRAIAEACENFSGADLAELVDEATRAALDEKYTAVEEGLTSVEASSDTYTCKPRHFDIALSKVFPSVSPAKRRRYERLAKRFKAS* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0888 822 Gene3D - 541 813 IPR027417 -
Amo14g0888 822 Pfam AAA+ lid domain 736 773 IPR041569 -
Amo14g0888 822 Pfam AAA+ lid domain 453 492 IPR041569 -
Amo14g0888 822 Pfam ATPase family associated with various cellular activities (AAA) 286 428 IPR003959 GO:0005524|GO:0016887
Amo14g0888 822 Pfam ATPase family associated with various cellular activities (AAA) 583 712 IPR003959 GO:0005524|GO:0016887
Amo14g0888 822 SMART AAA_5 282 432 IPR003593 -
Amo14g0888 822 SMART AAA_5 579 715 IPR003593 -
Amo14g0888 822 Gene3D - 714 798 - -
Amo14g0888 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 541 819 IPR027417 -
Amo14g0888 822 MobiDBLite consensus disorder prediction 57 99 - -
Amo14g0888 822 MobiDBLite consensus disorder prediction 71 99 - -
Amo14g0888 822 Pfam Nucleolin binding domain 19 59 IPR031996 -
Amo14g0888 822 CDD AAA 570 713 - -
Amo14g0888 822 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 84 818 - -
Amo14g0888 822 MobiDBLite consensus disorder prediction 117 152 - -
Amo14g0888 822 PANTHER AAA-FAMILY ATPASE 84 818 - -
Amo14g0888 822 ProSitePatterns AAA-protein family signature. 683 701 IPR003960 GO:0005524|GO:0016887
Amo14g0888 822 Gene3D - 238 429 IPR027417 -
Amo14g0888 822 Coils Coil 86 106 - -
Amo14g0888 822 CDD AAA 278 429 - -
Amo14g0888 822 MobiDBLite consensus disorder prediction 111 153 - -
Amo14g0888 822 ProSitePatterns AAA-protein family signature. 400 418 IPR003960 GO:0005524|GO:0016887
Amo14g0888 822 Gene3D - 431 535 - -
Amo14g0888 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 536 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0888 Amo-Chr14 12523501 12529579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0888 520 820 Calmodulin-binding Proteins AT3G56690 42.671 5.99e-65 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0888 K14571 - gmx:100809594 927.161