Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0870 ATGGCTGAATCGGACAACGAGTCAGGAGGACAAGGAGGGAACACTAGCGAGTTCAGGGAGCAGGACAGGTTCCTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCGAAAGAGGCTAAGGAGACGGTGCAGGAGTGTGTGTCGGAGTTCATAAGCTTCATAACGGGTGAAGCCTCCGATAAGTGCCAGAAGGAGAAACGCAAGACCATCAACGGCGACGATCTGCTGTGGGCCATGACTACCCTTGGATTTGAGGAGTACGTGGAGCCTCTTAAGGTGTATCTACACAAGTATAGGGAGATGGAGGGTGAGAGGACTGCTTTGATTGGAGGGACTAGGCAGCATGCTGGTGCTGATCAGAGCAACGACGGTGGTGCTGGTGGTGGTGGCGGGATGGTGCCATCACATATCATGATGATGATGGGGCATCAGCATCAGCATCAGTCTCATGGACACATAATGCACACCGATTTGCTGCTTGCTTGTAATTTTACTTGA 525 0.5276 MAESDNESGGQGGNTSEFREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKVYLHKYREMEGERTALIGGTRQHAGADQSNDGGAGGGGGMVPSHIMMMMGHQHQHQSHGHIMHTDLLLACNFT* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0870 174 MobiDBLite consensus disorder prediction 122 144 - -
Amo14g0870 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Amo14g0870 174 SUPERFAMILY Histone-fold 21 122 IPR009072 GO:0046982
Amo14g0870 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 163 - -
Amo14g0870 174 MobiDBLite consensus disorder prediction 1 21 - -
Amo14g0870 174 Gene3D Histone, subunit A 12 135 IPR009072 GO:0046982
Amo14g0870 174 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Amo14g0870 174 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Amo14g0870 174 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Amo14g0870 174 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Amo14g0870 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 163 IPR027113 GO:0001228|GO:0006355|GO:0016602
Amo14g0870 174 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0870 Amo-Chr14 12179563 12180687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0870 1 156 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.561 1.39e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo14g0870 CBFD_NFYB_HMF 1.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0870 K08065 - gmx:100778034 218.009