Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0837 ATGGAGCAGCAAATCCTTGCAGACCAAAACTTCCCTCTCTTCAAACCCACCTCCAAACCCTCCCGAAACCCTATCTCCACCGTCAACAACAATCACTCAACCTCTAAGCCAGCAGCTGCCGCCGCATCCACCACCACAGATTCCTCCTCTTCCTCCGCCTCCACATTCGCCGAACTCGGCCTTGCCGAATGGGCTGTCAAGACTTGCGGCGAGCTCGGGATGAAGCGTCCCCGGCGTGTTCAGTCGCGCTGCATCCCGCGCGTGCTGGAGGGCCGCCACGTGCTCGGCATCGATGAAACTGGCAGCGGCAAGACCGCCGCCTTCGCCCTCCCGATCCTCCACCGCCTGTCGGAGCACCCGTTCGGTGTGTTCGCGTTGGTGGTGACGCCCACTAGGGAACTGGCGTTCCAGCTAGCGGAGCAGTTCCGCGCCCTCGGTTCCTGCCTCCACCTCCGCATTGCAGTGGTTGTCGGCGGCATGGACATGCTTCGGCAGACCAAGGAGCTTGCTGCCAGGCCCCACGTCGTTATTGCCACGCCGGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCCAGTTTTTGCTAGAACTAAGTTCCTTGTCCTGGATGAAGCAGATCGAGTTCTTGATGTCGGTTTTCAGGAGGAATTGAAATTTATCTTTAAGTGCTTACCAGAAAATCGGCAAAATCTGTTCTTTTCTGCAACAACCACAAGTAATCTGCAAAAGTTGTCTGAGCGTTACCAGGATAGACTGTATGTCTACGAGGCATATGAAGGCCTGAAAACTGTAGAAACACTTAAGCAACAGGCTATGTTCATCCCTAAAAAGGTCAAGGAGGTATATTTGATGCATATTTTATCAAAAATGGAAGATATGGACATCCGATCTGCCATTGTATTTATCTCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCTTGAAGCGGCAGCCCTATATTCATTTAAATCGCAGGCTCAAAGGCTTGAGGCACTTCAACGGTTTAAATCAGGGAAGGTCTCTGTACTGCTAGCAACAGATGTTGCCAGCCGTGGTTTGGATATCCCGACAGTCGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGACTATGTTCATCGTGTTGGTCGTACTGCCAGAGCAGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTGTTYGTGAAATAGAAGCTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTTCTTTCTATCATGAAAAAGGTTTTCAGTGCCAAAAATGTGGCAGAAATGAAGATGATGGATGATGGATTTGAGGAGAAAGCAAAGGAGAGGAAAAAACAGAARCTGAAAATGCTAGCAGAGAAAGGATTGTTAAATAAAAGAGGTAATAAGAGAAAAAGAAACAAATTTGCAGAAGGAAAGAAGCAGAAAAAAGGTGGAAGCATCAGCAGATAA 1503 0.481 MEQQILADQNFPLFKPTSKPSRNPISTVNNNHSTSKPAAAAASTTTDSSSSSASTFAELGLAEWAVKTCGELGMKRPRRVQSRCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRIAVVVGGMDMLRQTKELAARPHVVIATPGRIKALLENPDIPPVFARTKFLVLDEADRVLDVGFQEELKFIFKCLPENRQNLFFSATTTSNLQKLSERYQDRLYVYEAYEGLKTVETLKQQAMFIPKKVKEVYLMHILSKMEDMDIRSAIVFISTCRDCHRLSLMLEVLDLEAAALYSFKSQAQRLEALQRFKSGKVSVLLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSLVTQNDVELVXEIEALIERQLEMIEYKENEVLSIMKKVFSAKNVAEMKMMDDGFEEKAKERKKQKLKMLAEKGLLNKRGNKRKRNKFAEGKKQKKGGSISR* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0837 500 Gene3D - 264 494 IPR027417 -
Amo14g0837 500 MobiDBLite consensus disorder prediction 7 47 - -
Amo14g0837 500 Coils Coil 411 429 - -
Amo14g0837 500 MobiDBLite consensus disorder prediction 468 500 - -
Amo14g0837 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 411 IPR027417 -
Amo14g0837 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Amo14g0837 500 SMART ultradead3 73 272 IPR014001 -
Amo14g0837 500 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 52 482 - -
Amo14g0837 500 SMART helicmild6 311 392 IPR001650 -
Amo14g0837 500 CDD DEADc_DDX49 58 258 - -
Amo14g0837 500 Pfam Helicase conserved C-terminal domain 293 392 IPR001650 -
Amo14g0837 500 Coils Coil 409 409 - -
Amo14g0837 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 431 IPR001650 -
Amo14g0837 500 CDD SF2_C_DEAD 269 401 - -
Amo14g0837 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 54 82 IPR014014 GO:0003724
Amo14g0837 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 257 IPR014001 -
Amo14g0837 500 Gene3D - 19 257 IPR027417 -
Amo14g0837 500 PANTHER RNA HELICASE 52 482 - -
Amo14g0837 500 Pfam DEAD/DEAH box helicase 79 246 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0837 Amo-Chr14 11586835 11590894 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0837 54 421 Eukaryotic Initiation Factors Gene Family AT3G19760 29.301 8.40e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0837 K14778 - gmx:100798597 754.207