Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0741 ATGGAGCAACAAATCCTTGCAGACCAAAACTTCCCTCTCTTCAAACCCACCTCCAAACCCTCCCGAAACCCTATCTCCACCGTCAACAACAATCACTCAACCTCTAAGCCACCAGCTGCCGCCGCATCCACCACCACAGATTCCTCCTCTTCCTCCGCCTCCACATTCGCCCAACTCGGCCTTGCCGAATGGGCTGTCAAGACTTGCGGCGAGCTCGGGATGAAGCGTCCCCGGCGTGTTCAGTCGCACTGCATCCCGCGCGTGCTGGAGGGCCGCCACGTGCTCGGCATCGATGAAACTGGCAGCGGCAAGACCGCCGCTTTCGCCCTCCCGATCCTCCACCGCCTGTCGGAGCACCCGTTCGGTGTGTTCGCGTTGGTGGTGACGCCCACTAGGGAACTGGCGTTCCAGCTAGCGGAGCAGTTCCGCGCCCTCGGTTCCTGCCTCCACCTCCGCATTGCAGTGGTTGTCGGCGGCATGGACATGCTTCGGCAGACCAAGGAGCTTGCTGCCAGGCCCCACGTCGTTATTGCCACGCCGGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCTAGTTTTTGCTAGAACTAAGTTCCTTGTCCTGGATGAAGCAGATCGAGTTCTTGATGTCGGTTTTCAGGAGGAATTGAAATTTATCTTTAAGTGCTTACCAGAAAATCGACAAAATCTGTTCTTTTCTGCAACAACCACAAGTAATCTGCAAAAGTTGTCTGAGCGTTACCAGGATAGACTGTATGTCTATGAGGCATATGAAGGCCTGAAAACTGTACAAACACTTAAGCAACAGGCTATGTTCATCCCTAAAAAGGTCAAGGAGGTATATTTGATGCATATTTTATCAAAAATGGAAGATATGGACATCCGATCTGCCATTGTATTTATCTCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCTTGAAGCAGCAGCRCTATATTCATTTAAATCGCAGGCTCAAAGGCTTGAGGCACTTCAACGGTTTAAATCAGGGAAGGTCTCTATACTGCTAGCAACAGATGTTGCCAGCCGTGGTTTGGATATCCCGACAGTCGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGACTATGTTCATCGTGTTGGTCGTACTGCCAGAGCAGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACCCAGGTAAGTCAAGTTCTTAGAAGTATAATGAGCTGCTAA 1245 0.5044 MEQQILADQNFPLFKPTSKPSRNPISTVNNNHSTSKPPAAAASTTTDSSSSSASTFAQLGLAEWAVKTCGELGMKRPRRVQSHCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRIAVVVGGMDMLRQTKELAARPHVVIATPGRIKALLENPDIPLVFARTKFLVLDEADRVLDVGFQEELKFIFKCLPENRQNLFFSATTTSNLQKLSERYQDRLYVYEAYEGLKTVQTLKQQAMFIPKKVKEVYLMHILSKMEDMDIRSAIVFISTCRDCHRLSLMLEVLDLEAAALYSFKSQAQRLEALQRFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSLVTQVSQVLRSIMSC* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0741 414 CDD DEADc_DDX49 56 258 - -
Amo14g0741 414 SMART helicmild6 311 392 IPR001650 -
Amo14g0741 414 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 52 405 - -
Amo14g0741 414 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Amo14g0741 414 MobiDBLite consensus disorder prediction 7 50 - -
Amo14g0741 414 Pfam Helicase conserved C-terminal domain 293 392 IPR001650 -
Amo14g0741 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 403 IPR027417 -
Amo14g0741 414 CDD SF2_C_DEAD 269 401 - -
Amo14g0741 414 Pfam DEAD/DEAH box helicase 79 246 IPR011545 GO:0003676|GO:0005524
Amo14g0741 414 Gene3D - 263 413 IPR027417 -
Amo14g0741 414 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 257 IPR014001 -
Amo14g0741 414 SMART ultradead3 73 272 IPR014001 -
Amo14g0741 414 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 414 IPR001650 -
Amo14g0741 414 Gene3D - 19 257 IPR027417 -
Amo14g0741 414 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 54 82 IPR014014 GO:0003724
Amo14g0741 414 PANTHER RNA HELICASE 52 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0741 Amo-Chr14 10113551 10116366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0741 54 403 Eukaryotic Initiation Factors Gene Family AT3G13920 31.429 1.73e-51 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0741 K14778 - gmx:100798597 627.091