Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0682 ATGGCAGAAACAGCAGTGTATCAGTGGCAGTATAGAGAAGAAAAGAGAGGAGAAGAGTTTTCATTGGGAAGCTCTAATGGTGGCCCTTCTTCTAATTGTTTCATGGCTTTTGGAGAAAACAACAACAACAGTAGTAGTAATAATAACAATAACAGTGTTAGTGGTAGTGGCCTATCTCCAATGATGATGATGCCTTTACTCACTACTAATTCCCATCATCCAACAAATAATCTTATTCCTCATCAAAATCATACTTCTACTTCTAATAACATTGCAAACATCTTCCTTCCCAACAACACCAACAATAGTAATACCAACACTTCTTTCATGCTTGAAAACAATACTACTACTACTACTACTGGTTTAGGATATTATTTCATGGACAACAACAATGGAAGCTCTTCTTCCTCTTCTCCTTCTTCTGCTGTCAAGGCAAAGATCATGGCCCATCCTCACTATCACCGCCTCTTGGCAGCTTACGTCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCAAGGTTAGAAGCAGCATGTGCATCTGCCATGTCAATGGCAGCTGCAGGAGACACATCAGCTTGCCTAGGTGAAGATCCATCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTCACAAAGTACGAGCAAGAACTTTCAAAACCCTTGAAGGAAGCCATGATCTTCCTTCAAAGGATGGAGTCTCAGTTCAAGAATCTCACCATCTCTTCTTCTTCTAGAGATCTTGGTAGCAAGGAGGCAAATGATGGGAATAATGGATCATCAGAAGAAGATGTAGATCTACAAAGCTTGATAGATCCTCAGGCAGAAGACAGGGAATTGAAGGGTCAGCTTCTTCGCAAGTACAGTGGCTACTTGGGAAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTAGCAGAATCCACTGGTTTGGATCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGGAAACGCCACTGGAAGCCTTCTGAGGACATGCAATTTGTGGTGGTGGATCCAACTCATCCACATTATTACATGGATAATGTTCTTGCCAATCCATTTTCCATGGATCTCCCCAACACAATGCTCTAG 1200 0.4217 MAETAVYQWQYREEKRGEEFSLGSSNGGPSSNCFMAFGENNNNSSSNNNNNSVSGSGLSPMMMMPLLTTNSHHPTNNLIPHQNHTSTSNNIANIFLPNNTNNSNTNTSFMLENNTTTTTTGLGYYFMDNNNGSSSSSSPSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEAACASAMSMAAAGDTSACLGEDPSLDQFMEAYCEMLTKYEQELSKPLKEAMIFLQRMESQFKNLTISSSSRDLGSKEANDGNNGSSEEDVDLQSLIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPTHPHYYMDNVLANPFSMDLPNTML* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0682 399 Gene3D - 306 368 - -
Amo14g0682 399 PANTHER - 30 388 - -
Amo14g0682 399 Pfam KNOX2 domain 196 242 IPR005541 GO:0003677|GO:0005634
Amo14g0682 399 MobiDBLite consensus disorder prediction 245 268 - -
Amo14g0682 399 MobiDBLite consensus disorder prediction 36 60 - -
Amo14g0682 399 ProSiteProfiles 'Homeobox' domain profile. 301 364 IPR001356 GO:0003677
Amo14g0682 399 ProSitePatterns 'Homeobox' domain signature. 339 362 IPR017970 GO:0000981|GO:0006355
Amo14g0682 399 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 388 - -
Amo14g0682 399 SMART ELK_2 281 302 IPR005539 GO:0003677
Amo14g0682 399 Pfam KNOX1 domain 142 181 IPR005540 GO:0003677|GO:0005634
Amo14g0682 399 CDD homeodomain 313 365 IPR001356 GO:0003677
Amo14g0682 399 Pfam ELK domain 281 302 IPR005539 GO:0003677
Amo14g0682 399 SMART KNOX2_2 192 243 IPR005541 GO:0003677|GO:0005634
Amo14g0682 399 SMART KNOX1_2 141 185 IPR005540 GO:0003677|GO:0005634
Amo14g0682 399 Pfam Homeobox KN domain 321 360 IPR008422 GO:0003677|GO:0006355
Amo14g0682 399 ProSiteProfiles ELK domain profile. 281 301 IPR005539 GO:0003677
Amo14g0682 399 SUPERFAMILY Homeodomain-like 303 378 IPR009057 -
Amo14g0682 399 SMART HOX_1 303 368 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0682 Amo-Chr14 9174340 9178625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0682 143 399 Homeobox Transcription Factor Family AT1G62360 80.534 1.61e-135 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo14g0682 KNOX2 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0682 - - gmx:100805837 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3695 01 110028016 110031660 Amo14g0682 14 9174340 9178625 PCT