Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0586 ATGGAAAACTTCACCTTGTCTTCGTCTTCTTCTTCATCTTCAACTTCTCCTCCTTCATCATCGCACATTGCAGGTGCAGCTTTCGACGACTATTCCGAGGACTTCTGCAGCATTTGTTTGGAGCCATTTGGCATCAATGACCCATCTACTATCACCTCTTGCAAACACGAATATCATCTGCACTGTATTCTTGAATGGTCAGAGAGAAGCAGAGAATGTCCAATATGTTTGCAGCTGCTTTCTTTCATTGATCCTTCTAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAATGTTCAAGGTCAAGAAACATATATCCATCTTCATTAACTAGTTCCCATATTCCCCATGATCAGCTCAATTATGACTATGGCGATTCTTACTCAGATGAGTCTGATATTGATGATCAAATTATGCAACACCTAGTTGCTGCTTCAAGCAGATCTCGTTTTCTCCATAGACGGGAAAGGCAAAGATCTTCTAGTGCAGGTCCATCAGAGGTGTTTGTTTCCAATCCTCCTGTGCATGTGTCTGCTGTGCGACCAACACTCACCATTTCACCCACCGGCAGTAGTTCACCAACTTCTGGTGTACCGTCTACTGTTCACATTCAACCTCCAACATCTGCTTTTCCCCCAGTTGTTGGTGAAGTTGCAGGAATTACTACTGCTGAGAATGATGTTCCTTTCAAACCCAGAGTTCTGTATACCCAGTCACCATCCAAGAGTGGAAGGAGACTAAATACCCCTGAGATGTTCTCTATCCCTGAGTCCTTCAGATCCAAATTTTCTGCTGCTTCAGCCAGGTATAAGGAATCAATAACCAAAAGTACTCGTGGCCTTAAAGAGAAGTTAATTGCTCATAATGCCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAACGTGAGATGAATGCAGGAATTGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTTTCCTCAAAGCGATCTAATTTTCCTCCCACTCCTGTTGGCACTGGGGGAAGTTCGGGATCCCCTGTAAAAGGAAAGTCAGTCGATGAGAATGACATTGACATGGGGCGTTCTCCTAGCATATACACTGAAAATGTGGTTCAGAATGTTAGCTCAGATGCTCCTTCAGTACCTGGCATGGTTGTTGGTCGAGTGGTTGCTGGTCGGGTGGAAATTCATCATTGTGTTCAGAGTGGAAAAGATGCTGCTGTGAGGACATAG 1215 0.4444 MENFTLSSSSSSSSTSPPSSSHIAGAAFDDYSEDFCSICLEPFGINDPSTITSCKHEYHLHCILEWSERSRECPICLQLLSFIDPSSQELLAAVEAEKCSRSRNIYPSSLTSSHIPHDQLNYDYGDSYSDESDIDDQIMQHLVAASSRSRFLHRRERQRSSSAGPSEVFVSNPPVHVSAVRPTLTISPTGSSSPTSGVPSTVHIQPPTSAFPPVVGEVAGITTAENDVPFKPRVLYTQSPSKSGRRLNTPEMFSIPESFRSKFSAASARYKESITKSTRGLKEKLIAHNASVKELSKGVQREMNAGIAGVARMIERLDLSSKRSNFPPTPVGTGGSSGSPVKGKSVDENDIDMGRSPSIYTENVVQNVSSDAPSVPGMVVGRVVAGRVEIHHCVQSGKDAAVRT* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0586 404 MobiDBLite consensus disorder prediction 182 205 - -
Amo14g0586 404 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Amo14g0586 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 81 IPR013083 -
Amo14g0586 404 MobiDBLite consensus disorder prediction 149 205 - -
Amo14g0586 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 3 372 - -
Amo14g0586 404 SMART ring_2 36 76 IPR001841 -
Amo14g0586 404 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 3 372 - -
Amo14g0586 404 MobiDBLite consensus disorder prediction 321 351 - -
Amo14g0586 404 Pfam Ring finger domain 36 76 IPR001841 -
Amo14g0586 404 MobiDBLite consensus disorder prediction 322 343 - -
Amo14g0586 404 SUPERFAMILY RING/U-box 28 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0586 Amo-Chr14 7872621 7875721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0586 5 84 C3H Transcription Factor Family AT4G00335 42.500 1.11e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0586 K19043 - gmx:100775754 380.948