Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0478 ATGATAATGGTTTCTTTCCTTTGCTACTACTATTGTGGTAATGGTGATAAACCAGACTTGAATGGATTAGACACTGAAGAAGGTGGTGGTGGAGGATGTTTAACAGATTACTCTACAAGCAGTGTAGGATCAAGAACACCTTCATCTTCAAGAGCAAGCACTTCTGATTCTGAGGCTCTACCAGGTAGTGGTGGTTCCAATGCTAACAACCAATGGCGTGGTTTCTTCAAGCTTCTCAAGAAAGGCTCACAGATGCCATTTCAACCATTTCACCCTCTTAAGAAGAATGTTCCTAAGTTAACTAGAAGGAAGAGTAAGAGGGTTAGAGAGGATCTCATTCCTTCTTCTTTTGACTCTGAGTTTGCCAACTTCAAATCTTCATGGAAGAATTTCACTCTCTCTGAACTCCAGGCTGCAACTGATGACTTCAGCCATGATAATGTGATTGGGGAGGGAGGGTATGCAGAGGTATACTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCATAAAGAAGCTTACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTTTTGTCTGAGCTTGGAATCATAGTTCATGTGGACCATCCAAACATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTCCTTGTTCTTCAGCTCTCTCCACATGGCAGCTTATCATCCATACTTTATGGGCCTAGAGAGAAGCTCAATTGGAGTCTCAGATTTAAGATTATTTTGGGAACTGCCGAGGGACTTTGCTATCTTCATGAGGGATGTCAAAGAAGAATCATTCACAAGGATATCAAGGCTTCTAATATTCTTCTCTCTGAGACTTTTGAGCCTCAGATATCTGATTTTGGCCTAGCAAAGTGGTTACCTGACCAATGGACTCACCATACTGTTTCCAAAGTAGAAGGCACATTCGGGTACCTTCCCCCTGAATTCTTCATGCATGGAATAGTAGATGAGAAAACTGATGTATATGCTTATGGTGTGCTATTATTGGAGCTAATCACTGGAAGACAAGCTTTGGATAGCTCACAAAAAAGTCTTATCATGTGGGCAAAGCCTTTGTTAATTGCAAACAACATAAAAGAGCTTGTTGATCCAGTTCTTGAAGACAATTATGATGAAGAGCAGATGGACCTAGTGATCTTAACAGCATCTCAGTGTGTAGAACAATCGTCGGCTCAACGGCCTCTTATGAGTGAGGTGCTACAAATATTAAGAGGGGATGAAGAGAGCTTGAAGTGCATGAAAGAAAGACAAAAGTCAAAAATTCAAAGAACATACTCTGAAGAACTGTTAGATGCAAATGAATACAATTCAACTAAGTATTTGAGTGAGAGTCAGAGCCAAAGAGCACGCCATATGGAGTTTATTCTAAGCAGTAACTCACCCACACAAGAAACGGAACAAAATTGA 1422 0.4051 MIMVSFLCYYYCGNGDKPDLNGLDTEEGGGGGCLTDYSTSSVGSRTPSSSRASTSDSEALPGSGGSNANNQWRGFFKLLKKGSQMPFQPFHPLKKNVPKLTRRKSKRVREDLIPSSFDSEFANFKSSWKNFTLSELQAATDDFSHDNVIGEGGYAEVYLGKLEDGNFVAIKKLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIILGTAEGLCYLHEGCQRRIIHKDIKASNILLSETFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLIMWAKPLLIANNIKELVDPVLEDNYDEEQMDLVILTASQCVEQSSAQRPLMSEVLQILRGDEESLKCMKERQKSKIQRTYSEELLDANEYNSTKYLSESQSQRARHMEFILSSNSPTQETEQN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0478 473 SUPERFAMILY Protein kinase-like (PK-like) 128 438 IPR011009 -
Amo14g0478 473 Pfam Protein tyrosine and serine/threonine kinase 146 407 IPR001245 GO:0004672|GO:0006468
Amo14g0478 473 Gene3D Phosphorylase Kinase; domain 1 116 217 - -
Amo14g0478 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Amo14g0478 473 PANTHER OS08G0249100 PROTEIN 48 446 - -
Amo14g0478 473 ProSiteProfiles Protein kinase domain profile. 143 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo14g0478 473 SMART serkin_6 143 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo14g0478 473 MobiDBLite consensus disorder prediction 34 68 - -
Amo14g0478 473 ProSitePatterns Protein kinases ATP-binding region signature. 149 172 IPR017441 GO:0005524
Amo14g0478 473 Gene3D Transferase(Phosphotransferase) domain 1 220 436 - -
Amo14g0478 473 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 48 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0478 Amo-Chr14 6699027 6701417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0478 111 452 Trihelix Transcription Factor Family AT5G38560 39.286 1.60e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo14g0478 PK_Tyr_Ser-Thr 2.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0478 - - gmx:100776081 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g0478 14 6699027 6701417 Amo14g0478 14 6699027 6701417 ECH
Amo14g0478 14 6699027 6701417 Amo16g0648 16 10522937 10528282 ECH
Amo14g0478 14 6699027 6701417 Amo19g1760 19 49631678 49632607 ECH
Amo14g0478 14 6699027 6701417 Amo16g0054 16 792950 794834 ECH
Amo14g0478 14 6699027 6701417 Amo12g3017 12 117794711 117800523 ECH