Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0453 ATGGACTCCATATCTGACGCTGCATGGAAAAGATGCACTTCTCTTCCTGTTACTCCTGCATCAAATCTGTCTCCTTCGGTTTCAACACCTGTTTCTGCAAGGACTTATACTGGACAGAAGCAACATAAGGATGTTGGTCGTTCCAAGGTTTCAAGGTCCCTTTCTGTACCTGGGAGAAATGTTGTTATTGTAAGATCCATCTCCTTTTCTACCCGTAGTGAACAGGATCAGCAAGATACAAATGATGATCAGATAACTCCCGTGCCACCAGAAGGTGCTGATGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTCTTGATGTCTGCGATGAAAGAAATACCTTGAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATAAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGAAGTATGTGGGCACGAGGTTCAGAATTTACCCGTAACTTTGCTTCGTGTTTCCAGCTCTATTCAACGGCAAAATAGACAAGTGCAGGGTCAACTAAACTCAAGTTCAGAATCAATAAATGCCTGGCAAGACTTTGTGGTGCTCGTCCTGATAAGCACAATATGCTACTTTTTCTTCATTGAACAGCTCCTGCTTCCTGAGTTGAAGACTCAAGCCATCATAATAGCAGCACCATTTGCCTTTACATTGGGCCTCCTGGCATCTATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTTGAGTTCGCTCTTGTGGCTATAACCGTGCATCTGTTTTATACCATGTTGCATTTGAAGGCCATCTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGAGCCTCAACTATTTATATATCCAATATGTTAATTGGAGACTTCAGGTCTCTCATAGTGATAACCTCCCAGTTTGA 945 0.4159 MDSISDAAWKRCTSLPVTPASNLSPSVSTPVSARTYTGQKQHKDVGRSKVSRSLSVPGRNVVIVRSISFSTRSEQDQQDTNDDQITPVPPEGADDEEIPEEEAVCRICLDVCDERNTLKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGHEVQNLPVTLLRVSSSIQRQNRQVQGQLNSSSESINAWQDFVVLVLISTICYFFFIEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVAITVHLFYTMLHLKAIYAILLSSVLGFGIAMSLNYLYIQYVNWRLQVSHSDNLPV* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0453 314 SUPERFAMILY RING/U-box 101 155 - -
Amo14g0453 314 MobiDBLite consensus disorder prediction 16 53 - -
Amo14g0453 314 MobiDBLite consensus disorder prediction 70 85 - -
Amo14g0453 314 MobiDBLite consensus disorder prediction 70 98 - -
Amo14g0453 314 PANTHER OS02G0165000 PROTEIN 4 311 - -
Amo14g0453 314 SMART ringv_2 104 152 IPR011016 GO:0008270
Amo14g0453 314 MobiDBLite consensus disorder prediction 16 39 - -
Amo14g0453 314 CDD RING_CH-C4HC3_MARCH 105 152 - -
Amo14g0453 314 PANTHER ZINC FINGER PROTEIN 4 311 - -
Amo14g0453 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 160 IPR013083 -
Amo14g0453 314 ProSiteProfiles Zinc finger RING-CH-type profile. 97 158 IPR011016 GO:0008270
Amo14g0453 314 Pfam RING-variant domain 105 151 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0453 Amo-Chr14 6432253 6436451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0453 58 208 C3H Transcription Factor Family AT2G37950 30.488 9.68e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0453 - - gmx:100527094 521.931