Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0404 ATGTTGATTTTCTTTCCGCTTCACTCGAGTGTAGGATCCAACATTTTCAGCCTTCACTTCCCATGCATCAATAGGATTAGGGTTTTCAGATATATGGGTTGCATATGCTTCAAAGGGAAATCTGCAGAGGAATACGTTGCAGAGAACCGCATAAGAAGGGGCAAGTCCAAGGCGTTGAAATCAAAGCTTGCGAGTAATTCTCTTCCCCTCATAGACGTTGGGAATGATGCCGTCCAAGGGGAGAACGAAGAGGTTCAGGTGGCTGTGGCACCCACGGTGTTCAGTGTGACCAACGGGGAGCGAGGAGCTCTGGTTATCGCTGGATGGCCCTCTTGGCTCGCTGCCGTTGCTGGGGAAGCCATTAATGGGTGGATTCCACGTAGAGCTGACTCCTTTGAGAAGTTCGATAAGATTGGACAAGGAACTTATAGTAGTGTTTATAGAGCTCGTGATCTTGAAACAAATAAAATTGTTGCATTAAAGAAGGTTCGATTTGCTACTATGGATCCAGAAAGTGTTCGCTTTATGGCAAGGGAAATTCTTTTGCTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTAGAAGGCATGATTACTTCCAGGGTTTCTGGTAGCTTGTACCTTATTTTTGACTATATGGAACATGATCTTGCAGGGCTTGCAGCAATACCTGGCATCAAGTTTTCTGAAGCACAGATCAAATGTTATATGCAACAACTACTTCGTGGTCTTGAGCATTGCCACGGTCGAGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTAGTTGATAATAATGGCCGTTTGAAGATTGGTGATTTTGGACTTGCAACTTCGTTTCAGCCATCTAAGGGGAAGCCTTTAACAAGTCGTGTTGTAACCTTGTGGTACCGACCGCCTGAACTTTTACTCGGAGCTACAGATTATGGAGTTTCTGTGGACTTATGGAGTTCTGGTTGTATTCTTGCTGAATTGTTTTCTGGAAAGGCTATAATGCCTGGACGAACAGAGGTGGAGCAACTTCATAAAATTTTCAAACTTTGTGGGTCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTGCGAAATGCAACAATTTTCAAACCTCAACAACCATACAAACGGGTTGTTTCTGAGACATTCAAGAATTTTCCTTCATCTGCACTGGGCCTATTGGAGGTACTTCTTGCTACAGAACCTGAAGATCGAGGAACAGCATCTTTAGCACTTCAAAATGAGTTCTTTACCACAGAGCCACTTCCATGTGATCCATCAACTTTGCCAAATTATCCACCGAGTAAGGAGTTTGATGTCAAACTTCAACAAGAGGAAGCTAGAAGGAGAGAGAGATCAACAAATAAAGAGCGTGAACAAGGATCAGTTAGGAGGAAGTTAAAAGAGTCTAAAAATGTTCTAGCTCCTGATGCTAATGCTGAATTGCAAGCATCAATAGAGAAGCGACAAAGGCAACCTAATTCAAAATCCATTGTTGAAAGCTACAATCCTAAAGAGGATGGCAACTCTGGCTTCCCTCTTGGACTTGCAAAGCCAAGAGTTCTCAGTGTCTTCTCTCATTCCGGCCAGTCAATGCATCCAAGTGCATATGGTTCCTCAAACAATATGAATTTGAAAGAGGAAAATGTTCTTATTGGCTTCAATCATGACTTTGGATCAAGGCACACTGAATTGAGTAAACAAAAATTTCGTTGGCTTGATGGCACACAATTGTCCAAATTTTCTGGTTCATTTGCAGTTCGAGGTGATGGCAATTCGAATGATTTGCTGGATGGACTGAAATTGCACCAAAAGGACTTCAATCCTTTTGAAAAGGATCTTACCATGGGTTATGCTTCCAAAAACAAACGCTTCCACTATTCTGGACCATTGTTGTCACAGGGGGGGAACATTGAAGACATGCTCAAGGAGCACGAAAGACAAATCCAACAGGCTGCCCGCAAAGGTCGTTTGGAAAAGGACAACACAAAAAAGGCTAAGAAGGAGAATGGCCTAACCGAATCACTACTATAG 2031 0.4303 MLIFFPLHSSVGSNIFSLHFPCINRIRVFRYMGCICFKGKSAEEYVAENRIRRGKSKALKSKLASNSLPLIDVGNDAVQGENEEVQVAVAPTVFSVTNGERGALVIAGWPSWLAAVAGEAINGWIPRRADSFEKFDKIGQGTYSSVYRARDLETNKIVALKKVRFATMDPESVRFMAREILLLRRLDHPNVMKLEGMITSRVSGSLYLIFDYMEHDLAGLAAIPGIKFSEAQIKCYMQQLLRGLEHCHGRGVMHRDIKGSNLLVDNNGRLKIGDFGLATSFQPSKGKPLTSRVVTLWYRPPELLLGATDYGVSVDLWSSGCILAELFSGKAIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLRNATIFKPQQPYKRVVSETFKNFPSSALGLLEVLLATEPEDRGTASLALQNEFFTTEPLPCDPSTLPNYPPSKEFDVKLQQEEARRRERSTNKEREQGSVRRKLKESKNVLAPDANAELQASIEKRQRQPNSKSIVESYNPKEDGNSGFPLGLAKPRVLSVFSHSGQSMHPSAYGSSNNMNLKEENVLIGFNHDFGSRHTELSKQKFRWLDGTQLSKFSGSFAVRGDGNSNDLLDGLKLHQKDFNPFEKDLTMGYASKNKRFHYSGPLLSQGGNIEDMLKEHERQIQQAARKGRLEKDNTKKAKKENGLTESLL* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0404 676 Gene3D Transferase(Phosphotransferase) domain 1 220 456 - -
Amo14g0404 676 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo14g0404 676 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo14g0404 676 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo14g0404 676 PANTHER CELL DIVISION PROTEIN KINASE 83 651 - -
Amo14g0404 676 MobiDBLite consensus disorder prediction 438 471 - -
Amo14g0404 676 MobiDBLite consensus disorder prediction 484 503 - -
Amo14g0404 676 Coils Coil 634 661 - -
Amo14g0404 676 MobiDBLite consensus disorder prediction 647 676 - -
Amo14g0404 676 MobiDBLite consensus disorder prediction 647 670 - -
Amo14g0404 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Amo14g0404 676 Gene3D Phosphorylase Kinase; domain 1 127 219 - -
Amo14g0404 676 SUPERFAMILY Protein kinase-like (PK-like) 125 424 IPR011009 -
Amo14g0404 676 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Amo14g0404 676 CDD STKc_CDK9_like 132 416 - -
Amo14g0404 676 PANTHER KINASE CDK9, PUTATIVE-RELATED 83 651 - -
Amo14g0404 676 MobiDBLite consensus disorder prediction 420 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0404 Amo-Chr14 5932405 5937184 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0404 124 459 Core Cell Cycle Gene Families AT5G10270 49.435 1.94e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo14g0404 Pkinase 5.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0404 - - aip:107638508 1238.79