Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0380 ATGTCTAGGATATGTGTGAAGAATATTCCAAAGTATGTTACAGAGGATCGATTAAGAGAATTCTTTTCTGAGAAAGGAGAAATCACCGATGTCAAGCTTATGCGTACAAAAGATGGTAAGAGTCGCCAATTTGCTTTTGTTGGATTTCGTTCAGAACACGAAGCTCAAGAAGCTATTCAATATTTCAATAGATCATACCTTGATACATGTAGAATTACTTGCGAGGTAGCTCGAAAACGTGGTGATGCAGATCTTCCTCGTCCATGGAGTCGGCATTCAGCTAGTAAAGAGAGTAAAGTGACCTCAGATGTCAACGAACATGTTGGATCAAAAGGGCAAGGACAAGGACATAGCTCTGAGGACATTGATGATCAGCAGCTTCAAGAGTTTCTTCAAGTAATGCAGCCTCGTGCCAACTCAAAACTGTGGGCAAATGATACATCAATTGTATCTACTGTTGATGAGAAGCAAAACGTATCAAAGAAGGGAAGCAAAGACACATCAGTTGCAATACCTACCGATTCAGATCACAGTGGTTCATCATCAGATCAGCTCAATAATCTTGAAGCTGACAAGTCATGTGAAACTGAACATGAAGTCATTTCTGACATGGATTATTTCAAGAGTAGAGTGACAAAAGATTGGTCTGATTCTGAAAGTGATGACAGTGACAATGATTCAGTATCTACTGATGATAATGACAAAGAGAATGATACTAATCCTAGTGAAGGTGAAGAAAATGTTGATAAGAAATCTTCAAAAGTAACCCAAACAGATGGTGCCAAAGAGTTAGACCTAAAGGGTCAACCGGATGCTAGTGGAGAGGATAGTGCCCAGCAAAAGTCTCAGGTGAATTCAGATGTGTTAGGCGGCCAATCATTGAATTCAGAAGATAAGAAAGAAGTTTATGAGTCATGCCGACTATTTGTCAGGAATTTGCCATATACCACCACGGCACTAGAAGAGTTGGATAATTCTATATTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATACAGAGATCTTCAGACAATAAAGAGTCCAAGGACCAAAATGTGAAAACTCTGAAACAAAAGAGAGAAGAAGAGAAGAAAGCTGCTGAAGCCAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACTGTCGTGGAAAACATTGCTTTGAAATATGGTGTCAGTAAAAGTGATTTATTAGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGATACAAAAAAGGCTTTTGCAAATGCTGGAGTGAATGTGGAGTCTTTGGAGGCACTTGCCAACGGAAAAGTTGATGGCTTAAAAAGAAGCAATCATGTACTTTTAGCGAAGAACCTGCCATATGGTTCGACGGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACGAAGACACTGGCTCTGGTTGTTTTCCTTGAAGCAGCAGAAGCTCGATCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCATTATACTTGGAGTGGGCTCCATTCGACATTCTTAGCCAAAGTACAACATCTAGAAATAATGAACTGAATACAGCAGTTGGTGAAAATGATGTCAAGCGGGTAATGTTGGAGCAACATGTGCAAAGAATATCAGATGAGGATATTGATCCAGACAGAGTTGAGGGTCGGTCCTTGTTTGTCAAGAATCTCAATTTCAAAACAACTAATGAGAGTTTGAAGAAACATTTCAATGAACACATGAAAGAGGGAAAAATTTTGAGTGTTAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGTTTTGGATTTATCGAGTTTGACTCTCTGGAGACTGCTACAAATATCTGCAAGGATTTACAGGGGACAGTATTGGATGGGCATGCTCTTATTTTACAACCTTGTCATGCCAAGAATGGTGGCCAATTACAAAAGACAGTTGAGAAGGACAAGAGTTCAACAAAGTTGCTTGTTAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATTTGAGACAGTTGTTCAGTCCATTTGGACAGGTTAAAAGGTTAAGGTTGCCAATGAAGTTCGGAAATCATAGAGGATTTGCTTTTGTGGAGTTTGTTACTCAGCAAGAAGCACAGAATGCACTTAAGGCACTTTCAAGCACCCATCTTTATGGAAGGCATCTAGTAATAGAGCGAGCAAAAGAAGGTGAGAGTCTGGAAGAACTACGTGCTCGAACAGCTGCTCAATTCAGTGATGAACAAAATGGATTTCAAAATGCCACTAAGTTATCTAAGAAAAGGAAACAAATGGCTGTCTTAGATGAAGGAAAGATGAAGTTTCAAAGGATTGCTGATTAG 2403 0.3958 MSRICVKNIPKYVTEDRLREFFSEKGEITDVKLMRTKDGKSRQFAFVGFRSEHEAQEAIQYFNRSYLDTCRITCEVARKRGDADLPRPWSRHSASKESKVTSDVNEHVGSKGQGQGHSSEDIDDQQLQEFLQVMQPRANSKLWANDTSIVSTVDEKQNVSKKGSKDTSVAIPTDSDHSGSSSDQLNNLEADKSCETEHEVISDMDYFKSRVTKDWSDSESDDSDNDSVSTDDNDKENDTNPSEGEENVDKKSSKVTQTDGAKELDLKGQPDASGEDSAQQKSQVNSDVLGGQSLNSEDKKEVYESCRLFVRNLPYTTTALEELDNSIFQGRLLHVMPAIQRSSDNKESKDQNVKTLKQKREEEKKAAEASGDTRAWNSLFMRPDTVVENIALKYGVSKSDLLDREADDLAVRIALGETQVISDTKKAFANAGVNVESLEALANGKVDGLKRSNHVLLAKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEAAEARSAFRGLAYKRYKDAPLYLEWAPFDILSQSTTSRNNELNTAVGENDVKRVMLEQHVQRISDEDIDPDRVEGRSLFVKNLNFKTTNESLKKHFNEHMKEGKILSVKVKKHLKNGKNVSMGFGFIEFDSLETATNICKDLQGTVLDGHALILQPCHAKNGGQLQKTVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQVKRLRLPMKFGNHRGFAFVEFVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDEQNGFQNATKLSKKRKQMAVLDEGKMKFQRIAD* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0380 800 CDD RRM6_RBM19_RRM5_MRD1 674 748 - -
Amo14g0380 800 MobiDBLite consensus disorder prediction 105 122 - -
Amo14g0380 800 MobiDBLite consensus disorder prediction 154 189 - -
Amo14g0380 800 MobiDBLite consensus disorder prediction 273 293 - -
Amo14g0380 800 SUPERFAMILY RNA-binding domain, RBD 551 660 IPR035979 GO:0003676
Amo14g0380 800 CDD RRM4_RBM19_RRM3_MRD1 454 525 - -
Amo14g0380 800 Gene3D - 666 775 IPR012677 -
Amo14g0380 800 Gene3D - 448 547 IPR012677 -
Amo14g0380 800 MobiDBLite consensus disorder prediction 343 369 - -
Amo14g0380 800 Coils Coil 339 366 - -
Amo14g0380 800 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Amo14g0380 800 SUPERFAMILY RNA-binding domain, RBD 451 538 IPR035979 GO:0003676
Amo14g0380 800 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Amo14g0380 800 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 576 650 IPR000504 GO:0003723
Amo14g0380 800 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 676 743 IPR000504 GO:0003723
Amo14g0380 800 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 459 517 IPR000504 GO:0003723
Amo14g0380 800 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 454 526 IPR000504 GO:0003723
Amo14g0380 800 SUPERFAMILY RNA-binding domain, RBD 669 752 IPR035979 GO:0003676
Amo14g0380 800 SUPERFAMILY RNA-binding domain, RBD 3 343 IPR035979 GO:0003676
Amo14g0380 800 MobiDBLite consensus disorder prediction 154 196 - -
Amo14g0380 800 MobiDBLite consensus disorder prediction 83 104 - -
Amo14g0380 800 CDD RRM5_RBM19_like 574 655 IPR034423 -
Amo14g0380 800 Gene3D - 548 665 IPR012677 -
Amo14g0380 800 Gene3D - 1 129 IPR012677 -
Amo14g0380 800 CDD RRM1_MRD1 2 77 - -
Amo14g0380 800 MobiDBLite consensus disorder prediction 213 297 - -
Amo14g0380 800 MobiDBLite consensus disorder prediction 230 270 - -
Amo14g0380 800 MobiDBLite consensus disorder prediction 83 122 - -
Amo14g0380 800 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 574 657 IPR000504 GO:0003723
Amo14g0380 800 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 674 750 IPR000504 GO:0003723
Amo14g0380 800 MobiDBLite consensus disorder prediction 339 369 - -
Amo14g0380 800 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 777 - -
Amo14g0380 800 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 777 - -
Amo14g0380 800 SMART rrm1_1 455 522 IPR000504 GO:0003723
Amo14g0380 800 SMART rrm1_1 675 746 IPR000504 GO:0003723
Amo14g0380 800 SMART rrm1_1 3 75 IPR000504 GO:0003723
Amo14g0380 800 SMART rrm1_1 575 653 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0380 Amo-Chr14 5553792 5564727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0380 2 82 Eukaryotic Initiation Factors Gene Family AT4G34110 29.630 3.97e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0380 K14787 - gmx:100798742 1084.32