Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0376 ATGATCATCGAAAGTCGGCGGCGTCTTCCCTTCCCCTATTCAAACCCTAAACCTAACCCTATTTTCTTCACTTTTCACCGCTCTGCTGCTATTCTGCAAGAGATGAGAGGAAGGAGTTACAGCCCGTCACCACCGCCGGCAAGGGGTTACAGCCGAAGAGGAAGGAGTCCGAGCCCAAGAGGCCGCTACTCTAGCCGCTCTAGAGATCTCCCTACCAGCCTTCTTGTTCGTAACCTTCGCCATGATTGTAGGCCTGAGGACCTTCGCAGACCTTTTGGTCAGTTTGGTGCCCTTAAGGACATTTACTTGCCCAAGGATTATTACACTGGAGAACCCCGTGGTTTTGGTTTTGTCCAGTATGTGGATCCTGCTGATGCGGCAGATGCCAAATATCATATGGATGGTCAAGTTCTACTTGGTCGGGAGTTGACTGTTGTCTTTGCCGAGGAGAATAGAAAGAAGCCAAGTGAGATGAGAACAAGGGAGAGAAGTTTGATTGTAGACAGTTACCAGTTTATCATATTCTTCGCAATTGGTATCACGGAGTTATTGCCAAGTCTACCCAATAGTTTAGCTTTCAATTGTTCTGCAGACTTCTTGCTCATTGCAGCAAAGAGGGGCCGATATGATCGAAGAAGGTCTCCTCCTCGTTATTCTCGATCACCCCGCTACTCTCGATCCCCACCACCACGTCATAGATCTCGTTCCCATAGTCGTGACTATTATTCCCCTCCTCCTAAAAGAAGGGAATATTCAAGATCTCCCTCGCCTGAAGGTAGAAGGTACAGTCGAGAAAGATCATATTCACATCATAGTAGAGAGAGGTCATCCTCGCGTTCTCCACCCTATAACGGTGGCTCAAGGAGCCGTAGTCAGAGTCCGGCAAAGGGACCAACCCATAGCAGAAGTCCAACCCCAGACCGTGATGTTAGGGAACTGGCAGCGCGCAGGTCCCCAGCCAGTGAGAACGTCAAATGGTGTTTGTTTTCGTTTATGCATTCATTGTTTTCGAAATGTGTCGTCACATTTCCTAATATCAAGGAGATGATTAGAATACATACTATTTCCTGTGGCGACACCTATGATGTTCTTCGAATAGTCAAAAGTTATACCGTAATCAAAATCTCGATCTTTGTAAAACCTCGAGACTCTGACTGA 1158 0.4724 MIIESRRRLPFPYSNPKPNPIFFTFHRSAAILQEMRGRSYSPSPPPARGYSRRGRSPSPRGRYSSRSRDLPTSLLVRNLRHDCRPEDLRRPFGQFGALKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPSEMRTRERSLIVDSYQFIIFFAIGITELLPSLPNSLAFNCSADFLLIAAKRGRYDRRRSPPRYSRSPRYSRSPPPRHRSRSHSRDYYSPPPKRREYSRSPSPEGRRYSRERSYSHHSRERSSSRSPPYNGGSRSRSQSPAKGPTHSRSPTPDRDVRELAARRSPASENVKWCLFSFMHSLFSKCVVTFPNIKEMIRIHTISCGDTYDVLRIVKSYTVIKISIFVKPRDSD* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0376 385 MobiDBLite consensus disorder prediction 302 316 - -
Amo14g0376 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Amo14g0376 385 MobiDBLite consensus disorder prediction 36 67 - -
Amo14g0376 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 150 IPR000504 GO:0003723
Amo14g0376 385 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 208 311 - -
Amo14g0376 385 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 35 163 - -
Amo14g0376 385 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 208 311 - -
Amo14g0376 385 SUPERFAMILY RNA-binding domain, RBD 40 159 IPR035979 GO:0003676
Amo14g0376 385 MobiDBLite consensus disorder prediction 234 277 - -
Amo14g0376 385 Gene3D - 52 171 IPR012677 -
Amo14g0376 385 MobiDBLite consensus disorder prediction 210 316 - -
Amo14g0376 385 SMART rrm1_1 73 146 IPR000504 GO:0003723
Amo14g0376 385 MobiDBLite consensus disorder prediction 278 300 - -
Amo14g0376 385 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 35 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0376 Amo-Chr14 5524643 5528576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0376 62 171 Eukaryotic Initiation Factors Gene Family AT4G34110 30.088 1.80e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0376 K12900 - gmx:100775883 206.068