Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0346 ATGTCTAGGATATGTGTGAAGAATATTCCAAAGTATGTTACAGAGGATCGATTAAGAGAATTCTTTTCTGAGAAAGGAGAAATCACCGATGTCAAGCTTATGCGTACAAAAGATGGTAAGAGTCGCCAATTTGCTTTTGTTGGATTTCGTTCAGAACACGAAGCTCAAGAAGCTATTCAATATTTCAATAGATCATACCTTGATACATGTAGARTTACTTGCGAGGTAGCTCGAAAACGTGGTGATGCAGATCTTCCTCGTCCATGGAGTCGGCATTCAGCTAGTAAAGAGAGTAAAGTGACCTCAGATGTCAACGAACATGTTGGATCAAAMGGGCAAGGACAAGGACATAGCTCTGAGGACATTGATGATCAGCAGCTTCAAGAGTTTCTTCAAGTAATGCAGCCTCGTGCCAACTCAAAACTGTGGGCAAATGATACATCAATTGTATCTACTGTTGATGAGAAGCAAAACGTATCAAAGAAGGGAAGCAAAGACACATCARTTGCAATMCCTRCCGATTCAGATCACAGTGGTTCATCATCAGATCAGCTCAATAATCTTGAAGCTGACAAGTCATGTGAAACTGAACATGAAGTCATTTCTGACATGGATTATTTCAAGAGTAGAGTGACAAAAGATTGGTCTGATTCTGAAAGTGATGACAGTGACAATGATTCAGTATCTACTGATGATAATGACAAAGAGAATGATACTAATCCTAGTGAAGGTGAAGAAAATGTTGATAAGAAATCTTCAAAAGTAACCCAAACAKATGGTGCCAAAGAGTTAGACCTAAAGGGTCAACCGGATGCTAGTGGAGAGGATAGTGCCCAGCAAAAGTCTCAGGTGAATTCAGATGTGTTAGGCGGCCAATCATTGAATTCAGAAGATAAGAAAGAAGTTTATGAGTCATGCCGACTATTTGTCAGGAATTTGCCATATACCACCACTGAGGAGGAACTGGAAGAGCATTTCAGCAAGATTGGTAGTGTTTCACAAGTTYATCTAGTAGTTGATAAAAGTACAAAACGATCCAAAGGAATAGCATATATTCTTTATTCATTTCCCGAATTTGCAGCCAGGGCACTAGAAGAGTTGGATAATTCTATATTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATACAGAGATCTTCAGACAATAAAGAGTCCAAGGACCAAAATGTGAAAACTCTGAAACAAAAGAGAGAAGAAGAGAAGAAAGCTGCTGAAGCCAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACTGTCGTGGAAAACATTGCTTTGAAATATGGTGTCAGTAAAAGTGATTTATTAGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGATACAAAAAAGGCTTTTGCAAATGCTGGAGTGAATGTGGAGTCTTTGGAGGCACTTGCCAACGGAAAAGTTGATGGCTTAAAAAGAAGCAATCATGTACTTTTAGCGAAGAACCTGCCATATGGTTCGACGGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACGAAGACACTGGCTCTGGTTGTTTTCCTTGAAGCAGCAGAAGCTCGATCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCATTATACTTGGAGTGGGCTCCATTCGACATTCTTAGCCAAAGTACAACATCTAGAAATAATGAACTGAATACAGCAGTTGGGGAAAATGATGCCAAGCGGGTAATGTTGGAGCAACATGTGCAAAGAATATCAGATGAGGATATTGATCCAGACAGAGTGGAGGGTCGGTCCTTGTTTGTCAAGAATCTCAATTTCAAAACAACAAATGAGAGTTTGAAGAAACATTTCAATGAACACATGAAAGAGGGAAAAATTTTGAGTGTTAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGTTTTGGATTTATCGAGTTTGACTCTCTGGAGACTGCTACAAATATCTGCAAGGATTTACAGGGGACAGTATTGGATGGGCATGCTCTTATTTTACAACCTTGTCATGCCAAGAATGGTGGCCAATTACAAAAGACAGTTGAGAAGGACAAGAGTTCAACAAAATTGCTTGTTAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATTTGAGACAGTTGTTCAGTCCATTTGGACAGGTTAAAAGGTTAAGGTTGCCAATGAAGTTCGGAAATCATAGAGGATTTGCTTTTGTGGAGTTTGTTACTCAGCAAGAAGCACAGAATGCACTTAAGGCACTTTCAAGCACCCATCTTTATGGAAGGCATCTAGTAATAGAGCGAGCAAAAGAAGGTGAGAGTTTGGAAGAACTACGTGCTCGAACAGCTGTTCAATTCAGTGATGAACAAAGTGGATTTCAAAATGCCACTAAGTTATCTAAGAAAAGGAAACAAATGGCCGTCTTAGATGAAGGAAAGATGAAGTTTCAAAGGATTGCTGATTAG 2535 0.3941 MSRICVKNIPKYVTEDRLREFFSEKGEITDVKLMRTKDGKSRQFAFVGFRSEHEAQEAIQYFNRSYLDTCRXTCEVARKRGDADLPRPWSRHSASKESKVTSDVNEHVGSXGQGQGHSSEDIDDQQLQEFLQVMQPRANSKLWANDTSIVSTVDEKQNVSKKGSKDTSXAIPXDSDHSGSSSDQLNNLEADKSCETEHEVISDMDYFKSRVTKDWSDSESDDSDNDSVSTDDNDKENDTNPSEGEENVDKKSSKVTQTXGAKELDLKGQPDASGEDSAQQKSQVNSDVLGGQSLNSEDKKEVYESCRLFVRNLPYTTTEEELEEHFSKIGSVSQVXLVVDKSTKRSKGIAYILYSFPEFAARALEELDNSIFQGRLLHVMPAIQRSSDNKESKDQNVKTLKQKREEEKKAAEASGDTRAWNSLFMRPDTVVENIALKYGVSKSDLLDREADDLAVRIALGETQVISDTKKAFANAGVNVESLEALANGKVDGLKRSNHVLLAKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEAAEARSAFRGLAYKRYKDAPLYLEWAPFDILSQSTTSRNNELNTAVGENDAKRVMLEQHVQRISDEDIDPDRVEGRSLFVKNLNFKTTNESLKKHFNEHMKEGKILSVKVKKHLKNGKNVSMGFGFIEFDSLETATNICKDLQGTVLDGHALILQPCHAKNGGQLQKTVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQVKRLRLPMKFGNHRGFAFVEFVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAVQFSDEQSGFQNATKLSKKRKQMAVLDEGKMKFQRIAD* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0346 844 Gene3D - 272 418 IPR012677 -
Amo14g0346 844 Gene3D - 592 709 IPR012677 -
Amo14g0346 844 Gene3D - 1 128 IPR012677 -
Amo14g0346 844 CDD RRM3_RBM19_RRM2_MRD1 307 380 - -
Amo14g0346 844 MobiDBLite consensus disorder prediction 171 189 - -
Amo14g0346 844 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Amo14g0346 844 SUPERFAMILY RNA-binding domain, RBD 596 704 IPR035979 GO:0003676
Amo14g0346 844 MobiDBLite consensus disorder prediction 273 293 - -
Amo14g0346 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Amo14g0346 844 CDD RRM5_RBM19_like 618 699 IPR034423 -
Amo14g0346 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Amo14g0346 844 MobiDBLite consensus disorder prediction 214 296 - -
Amo14g0346 844 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 821 - -
Amo14g0346 844 MobiDBLite consensus disorder prediction 154 202 - -
Amo14g0346 844 SMART rrm1_1 499 566 IPR000504 GO:0003723
Amo14g0346 844 SMART rrm1_1 307 380 IPR000504 GO:0003723
Amo14g0346 844 SMART rrm1_1 719 790 IPR000504 GO:0003723
Amo14g0346 844 SMART rrm1_1 3 75 IPR000504 GO:0003723
Amo14g0346 844 SMART rrm1_1 619 697 IPR000504 GO:0003723
Amo14g0346 844 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 821 - -
Amo14g0346 844 MobiDBLite consensus disorder prediction 104 127 - -
Amo14g0346 844 MobiDBLite consensus disorder prediction 230 252 - -
Amo14g0346 844 CDD RRM6_RBM19_RRM5_MRD1 718 792 - -
Amo14g0346 844 SUPERFAMILY RNA-binding domain, RBD 495 582 IPR035979 GO:0003676
Amo14g0346 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 570 IPR000504 GO:0003723
Amo14g0346 844 MobiDBLite consensus disorder prediction 83 103 - -
Amo14g0346 844 Gene3D - 710 819 IPR012677 -
Amo14g0346 844 Gene3D - 492 591 IPR012677 -
Amo14g0346 844 SMART rrm2_1 619 699 IPR003954 GO:0003676
Amo14g0346 844 SMART rrm2_1 307 380 IPR003954 GO:0003676
Amo14g0346 844 SMART rrm2_1 3 75 IPR003954 GO:0003676
Amo14g0346 844 CDD RRM1_MRD1 2 77 - -
Amo14g0346 844 CDD RRM4_RBM19_RRM3_MRD1 498 569 - -
Amo14g0346 844 SUPERFAMILY RNA-binding domain, RBD 713 796 IPR035979 GO:0003676
Amo14g0346 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 618 701 IPR000504 GO:0003723
Amo14g0346 844 MobiDBLite consensus disorder prediction 387 412 - -
Amo14g0346 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 378 IPR000504 GO:0003723
Amo14g0346 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 620 694 IPR000504 GO:0003723
Amo14g0346 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 70 IPR000504 GO:0003723
Amo14g0346 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 561 IPR000504 GO:0003723
Amo14g0346 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 720 787 IPR000504 GO:0003723
Amo14g0346 844 SUPERFAMILY RNA-binding domain, RBD 301 387 IPR035979 GO:0003676
Amo14g0346 844 MobiDBLite consensus disorder prediction 83 127 - -
Amo14g0346 844 Coils Coil 383 410 - -
Amo14g0346 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 718 794 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0346 Amo-Chr14 4939186 4950192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0346 2 82 Eukaryotic Initiation Factors Gene Family AT1G49760 38.272 2.41e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0346 K14787 - gmx:100798742 1164.44