Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0197 ATGTGCAAAGAGCCAGATCTCAGTGAAAATTTAGGGTTGCAGGATGAAACTCGTGATGAACTTGGTACAGAATTTCACAAGAAGTTGGATTTGAAGGATGAAGATGAAAGAGTAGCTGAAAATGAGAAGAAAGATTCAGACTTTGTAGCTGGTAGTGGAGAATATGGTGGTAAAGAATTGGGTGGTGAAGGTGGTTGTGCCCCGAAAACAGGTGAAGCACAAGGGAGTGATGATAATGATAGTTGGGATGATGATGAGGGTTATGGCTTGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTAGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTAAAGATTGTGCTTTCTATCTTAAAATTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGCATGGCATGGAAGGTGCCAAATCATTACTCCATTTGTTAACTGTGTACCGAAAAGGATCGAAAGACAACTATGAGTCCTGGAGCTGA 618 0.4078 MCKEPDLSENLGLQDETRDELGTEFHKKLDLKDEDERVAENEKKDSDFVAGSGEYGGKELGGEGGCAPKTGEAQGSDDNDSWDDDEGYGLNENVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSSRVQQQYPLRPDAKDCAFYLKIGTCKFGFNCKFNHPLGRRKNQHGMEGAKSLLHLLTVYRKGSKDNYESWS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0197 205 MobiDBLite consensus disorder prediction 1 20 - -
Amo14g0197 205 Gene3D - 117 176 - -
Amo14g0197 205 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 18 181 - -
Amo14g0197 205 SUPERFAMILY CCCH zinc finger 144 173 IPR036855 GO:0046872
Amo14g0197 205 MobiDBLite consensus disorder prediction 32 49 - -
Amo14g0197 205 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Amo14g0197 205 MobiDBLite consensus disorder prediction 32 141 - -
Amo14g0197 205 MobiDBLite consensus disorder prediction 88 108 - -
Amo14g0197 205 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 170 IPR000571 GO:0046872
Amo14g0197 205 PANTHER PROTEIN PHOSPHATASE RELATED 18 181 - -
Amo14g0197 205 SMART c3hfinal6 144 171 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0197 Amo-Chr14 2619642 2620688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0197 127 186 C2H2 Transcription Factor Family AT5G16540 41.667 4.79e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo14g0197 zf-CCCH 3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0197 - - adu:110280340 239.965