Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo14g0197 | ATGTGCAAAGAGCCAGATCTCAGTGAAAATTTAGGGTTGCAGGATGAAACTCGTGATGAACTTGGTACAGAATTTCACAAGAAGTTGGATTTGAAGGATGAAGATGAAAGAGTAGCTGAAAATGAGAAGAAAGATTCAGACTTTGTAGCTGGTAGTGGAGAATATGGTGGTAAAGAATTGGGTGGTGAAGGTGGTTGTGCCCCGAAAACAGGTGAAGCACAAGGGAGTGATGATAATGATAGTTGGGATGATGATGAGGGTTATGGCTTGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTAGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTAAAGATTGTGCTTTCTATCTTAAAATTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGCATGGCATGGAAGGTGCCAAATCATTACTCCATTTGTTAACTGTGTACCGAAAAGGATCGAAAGACAACTATGAGTCCTGGAGCTGA | 618 | 0.4078 | MCKEPDLSENLGLQDETRDELGTEFHKKLDLKDEDERVAENEKKDSDFVAGSGEYGGKELGGEGGCAPKTGEAQGSDDNDSWDDDEGYGLNENVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSSRVQQQYPLRPDAKDCAFYLKIGTCKFGFNCKFNHPLGRRKNQHGMEGAKSLLHLLTVYRKGSKDNYESWS* | 206 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo14g0197 | 205 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Amo14g0197 | 205 | Gene3D | - | 117 | 176 | - | - | |
Amo14g0197 | 205 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 18 | 181 | - | - | |
Amo14g0197 | 205 | SUPERFAMILY | CCCH zinc finger | 144 | 173 | IPR036855 | GO:0046872 | |
Amo14g0197 | 205 | MobiDBLite | consensus disorder prediction | 32 | 49 | - | - | |
Amo14g0197 | 205 | ProSiteProfiles | Zinc finger C3H1-type profile. | 144 | 172 | IPR000571 | GO:0046872 | |
Amo14g0197 | 205 | MobiDBLite | consensus disorder prediction | 32 | 141 | - | - | |
Amo14g0197 | 205 | MobiDBLite | consensus disorder prediction | 88 | 108 | - | - | |
Amo14g0197 | 205 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 148 | 170 | IPR000571 | GO:0046872 | |
Amo14g0197 | 205 | PANTHER | PROTEIN PHOSPHATASE RELATED | 18 | 181 | - | - | |
Amo14g0197 | 205 | SMART | c3hfinal6 | 144 | 171 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo14g0197 | Amo-Chr14 | 2619642 | 2620688 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo14g0197 | 127 | 186 | C2H2 Transcription Factor Family | AT5G16540 | 41.667 | 4.79e-10 | 55.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Amo14g0197 | zf-CCCH | 3e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo14g0197 | - | - | adu:110280340 | 239.965 |