Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0172 ATGAGTACCATGACGAATAAGTGTGATGGTCGGAAAGTCTCCAAGGTTCGCCGCTCATCCTCATCGGTTGAAGAGGATAGTGGTGAAAGTAACATTGGAGGAGAAGGTCATTTAAAGAAAGGTCCTTGGACCTCAGCAGAGGATGCAATTTTAGTAGATTATGTCAAGAAGAATGGAGAAGGGAATTGGAATGCAGTTCAAAGGCATTCAGGACTTGCCAGATGCGGAAAAAGTTGTCGTTTACGGTGGGCAAATCATTTGAGACCAGATTTAAGAAAGGGCGCATTCACCGAAGAAGAAGAGCGCCGGATCATTGAGCTTCATGCTAAGATGGGAAACAAATGGGCACGGATGGCTGCAGAGTTGCCTGGGCGTACAGACAATGAGATAAAGAACTATTGGAACACGAGAATTAAAAGAATGCAGCGAGCTGGTCTRCCAATCTACCCTCCTGATGTATGCCTGCGGGTGATGCATGGCAATCAAGAAAGTGTAAATGTTGGTACCTTGAGAGATGAAGCCAACCAGCATGATGATCTCTCACAGACRGATACTCTGGATATACCGGAGTTAGATTTCAAACTAGTCAAASTCTGTCCRGGTTTATCTTATGGAMCATCAATTTGTGAYATACCTGAAAGTAGCATGGTTGAAATGAGTTCGGACTCGTCCCATGGTTACAATCACATGTTTCCTGTGATGCCTCCTTCGAAACGCCTTCGAGAATCAGACATGCAATATGGATATTTGGACAGTTGTATCAGTGATACTGTCCCAATATTTGAACAGTATGGTGATTACACGTGTGATAAAATTTCCGACCATACTCAATTGTCTTCTCCATGTGATCCTATTCTAAACACCAGCGATCAGTTTCATGGTGATGACACATATGGTAGCCATGCTCCCTTAAATGGCAATACTTCTTCTTCTTCTGTGCCCCTACCCGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTTTGAAACTCAACACGGTATCTGGGGCACACCTGCTTCCCCACTTCCCTCACTTGAGTCCGTTGACACGATGATCCAGTCTCCGCCGGCCAAGCCGTCTCCTTCGGATCCTGTTTCTCCAGAGAGGAGCGGTTTGCTGGAAGCAATAATCTACCAGCCGAAGCAGTTACAAGTGGCGAATAACAATTCACTTCAAGCAACACCCAATGATTGTGTTCGCAAAGAAGTTAAGATTTCAACCATGAAGTCTAAGCCAGAATGCGATGAACAAGGCGGGCCGTATTTCCCCTTAGATCAGTCTGCTGCTTCAGTTGCAACCAATTATACTTCCATTAGCATGTGCTTGGTGGATGCACCCCAATCAGTTGAAACTATTCAGGATCATAATATTAAGCAAGAACTAGGCACACAGTACCCAGCTTATGTTTCTGGGAAGAAAGAAAACTGGAATCAAATAGACTTCACACGGCCCGATGCTTTACTCGACTTGGGTTGGTATGGGAGTGGCATCGATTGCGACGATTATGATGGCGATCGGTTTCTTTTTAAAGATGCTTTCAGCCCATTTCTTGGTCAAGATCCGGATGGTTAG 1575 0.4483 MSTMTNKCDGRKVSKVRRSSSSVEEDSGESNIGGEGHLKKGPWTSAEDAILVDYVKKNGEGNWNAVQRHSGLARCGKSCRLRWANHLRPDLRKGAFTEEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPDVCLRVMHGNQESVNVGTLRDEANQHDDLSQTDTLDIPELDFKLVKXCPGLSYGXSICDIPESSMVEMSSDSSHGYNHMFPVMPPSKRLRESDMQYGYLDSCISDTVPIFEQYGDYTCDKISDHTQLSSPCDPILNTSDQFHGDDTYGSHAPLNGNTSSSSVPLPGAMKLELPSLQYFETQHGIWGTPASPLPSLESVDTMIQSPPAKPSPSDPVSPERSGLLEAIIYQPKQLQVANNNSLQATPNDCVRKEVKISTMKSKPECDEQGGPYFPLDQSAASVATNYTSISMCLVDAPQSVETIQDHNIKQELGTQYPAYVSGKKENWNQIDFTRPDALLDLGWYGSGIDCDDYDGDRFLFKDAFSPFLGQDPDG* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0172 524 MobiDBLite consensus disorder prediction 286 315 - -
Amo14g0172 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Amo14g0172 524 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 521 - -
Amo14g0172 524 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Amo14g0172 524 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Amo14g0172 524 Gene3D - 39 92 - -
Amo14g0172 524 MobiDBLite consensus disorder prediction 286 316 - -
Amo14g0172 524 CDD SANT 42 87 IPR001005 -
Amo14g0172 524 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 521 - -
Amo14g0172 524 MobiDBLite consensus disorder prediction 1 41 - -
Amo14g0172 524 SMART sant 92 140 IPR001005 -
Amo14g0172 524 SMART sant 39 89 IPR001005 -
Amo14g0172 524 Gene3D - 95 166 - -
Amo14g0172 524 MobiDBLite consensus disorder prediction 339 370 - -
Amo14g0172 524 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Amo14g0172 524 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Amo14g0172 524 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Amo14g0172 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 87 IPR017930 -
Amo14g0172 524 CDD SANT 107 136 IPR001005 -
Amo14g0172 524 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0172 Amo-Chr14 2297035 2303624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0172 35 521 MYB Transcription Factor Family AT5G06100 39.718 1.34e-91 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo14g0172 Myb_DNA-binding 8.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0172 K09422 - gmx:100800658 629.787