Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g0078 ATGAGTAGCATGACGAACATGGGTGATGGTCGAAAAGTACCCAAAAGTCGTCGGTCACCATCATCAGATGAGGAGGCTAAGACGGGAGGAGAAGGTCATTTAAAGAAAGGCCCTTGGACATCAATAGAGGATGCAATTCTAGTAGACTACGTTACCAAGCATGGAGAGGGGAATTGGAATGCTGTTCAAAGGAATTCGGGACTTGCCCGATGCGGTAAAAGCTGTCGATTACGATGGGCAAATCATTTGAGACCAGATTTGAAAAAGGGAGCATTCACTGAAGAAGAAGAGCGCAGGATCATTGAGCTTCATGCTAAGATGGGAAACAAATGGGCACGGATGGCTGCAGAGCTGCCTGGGCGTACGGACAATGAGATAAAGAACTATTGGAACACAAGAATTAAAAGAATGCAGCGGTCTGGTTTACCAATCTACCCTCCTGACATATGCTTGCGGGTGATGCATGGAAATCAAGAAAGTCAAAATGTTGGCAGGTTGACCGACGGAGTCAACCAGCATGACGATCTTTCACAAACAGACACGTTGAATATACCAGAGTTGGATTTCAAACACGTTAAGATCCCCCTGGATCCATCGATTTTTGACATACCTGAAAACAGCATGTTTGAACAGAGTTCAGATTCATCCCATGGTTACAACATGTTTCCTATCATGCATCCTGCCAAGCGCCTTCGGGAATCAGCAGAAATAATGCAGTATGGTCCGGTATATGAAGAAGATTACATGTCTGATGAAATTACCAACCAGTTTCATGGCAATACTTGTTGTTCTTCTTCATCTTCAATGCCTCTATCCGGAGGCATGAAGTTGGAGCTCCCTTCACTCCAATACTTAGAGACTCAACAAGGCATTTGGGACACACCTGCTTCCCCACTTCCTTCACTTGAGTCTGTTGACACCTTGAGCAGCGGTTTGTTGGAACCAATAATGTATCAACCAATGAAGCATTTTCAAGTGCAAGAAACACCAGATGAAGCAGTCAAGTGTAAGCCGGAATGGGATGAATCCGGGGAGCCGTATTCCCCCTTGGCTCAATCTTCTGCTTCCGTTCTAACCATGTGCTCACCCGACGGACCTCAATCAGTCGAAAACTCAGATCATAATATAAAGCACGAACTAGGCACAGAGTTCCCAACTTACTGTTCTGGGAAGGATGAAAAAAACATGAATCAAATACACGTGACAAGGCCCGATGCTTTACTTGACTTGGCTTGGTTTGAGAATAGCGTCGTCAATTGCGACGGCGATAAGTCTTTTAGAAAAGATGCCTTCAACACATTTTTTGATCACCCTACAGCCGACGACCTAGATGTAATAACGTCAACAACCGCCGTAACTCTCTACACCCCTCTGTTGGCCAAGGTTAGCTTTCTTCCCGTTTTTCCCTTTCTTAATTTCTCTTTCTTCATTTCTTCAATCACTCTTGCTTGCTGTATATTGAGAGCCATGAGTACCATGACGAATAAGTGTGATGGTCGGAAAGTCTCCAAGGTTCGCCGCTCATCCTCATCGGTTGAAGAGGATAGTGGTGAAAGTAACATTGGAGGAGAAGGTCATTTAAAGAAAGGTCCTTGGACCTCAGCAGAGGATGCAATTTTAGTAGATTATGTCAAGAAGAATGGAGAAGGGAATTGGAATGCAGTTCAAAGGCATTCAGGACTTGCCAGATGCGGAAAAAGTTGTCGTTTACGGTGGGCAAATCATTTGAGACCAGATTTAAGAAAGGGCGCATTCACCGAAGAAGAAGAGCGCCGGATCATTGAGCTTCATGCTAAGATGGGAAACAAATGGGCACGGATGGCTGCAGAGTTGCCTGGGCGTACAGACAATGAGATAAAGAACTATTGGAACACGAGAATTAAAAGAATGCAGCGAGCTGGTCTGCCAATCTACCCTCCTGATGTATGCCTGCGGGTGATGCATGGCAATCAAGAAAGTGTAAATGTTGGTACCTTGAGAGATGAAGCCAACCAGCATGATGATCTCTCACAGACGGATACTCTGGATATACCGGAGTTAGATTTCAAACTAGTCAAAGTCTGTCCGGGTTTATCTTATGGACCATCAATTTGTGACATACCTGAAAGTAGCATGGTTGAAATGAGTTCGGACTCGTCCCATGGTTACAATCACATGTTTCCTGTGATGCCTCCTTCGAAACGCCTTCGAGAATCAGACATGCAATATGGATATTTGGACAGTTGTATCAGTGATACTGTCCCAATATTTGAACAGTATGGTGATTACACGTGTGATAAAATTTCCGACCATACTCAATTGTCTTCTCCATGTGATCCTATTCTAAACACCAGCGATCAGTTTCATGGTGATGACACATATGGTAGCCATGCAACCTTAAATGGCAATACTTCTTCTTCTGTGCCCCTACCCGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTTTGAAACTCAACACGGTATCTGGGGCACACCTGCTTCCCCACTTCCCTCACTTGAGTCCGTTGACACGATGATCCAGTCTCCGCCGGCCAAGCCGTCTCCTTCGGATCCTGTTTCTCCAGAGAGGAGCGGTTTGCTGGAAGCAATAATCTACCAGCCGAAGCAGTTACAAGTGGCGAATAACAATTCACTTCAAGCAACACCCAATGATTGTGTTCGCAAAGAAGTTAAGATTTCAACCATGAAGTCTAAGCCAGAATGCGATGAACAAGGCGGGCCGTATTTCCCCTTAGATCAGTCTGCTGCTTCAGTTGCAACCAATTATACTTCCATTAGCATGTGCTTGGTGGATGCACCCCAATCAGTTGAAACTATTCAGGATCATAATATTAAGCAAGAACTAGGCACACAGTACCCAGCTTACGTGTCTGGGAAGAAAGAAAACTGGAATCAAATAGACTTCACACGGCCCGATGCTTTACTCGACTTGGGTTGGTTTGGGAGTGGCATCGATTGCCACGATTATGATGGCGATCAGTTTCTTTTCAAAGATGCTTTAAGCCCATTTCTTGGTCAAGATCCGGATGGTTAG 3039 0.4498 MSSMTNMGDGRKVPKSRRSPSSDEEAKTGGEGHLKKGPWTSIEDAILVDYVTKHGEGNWNAVQRNSGLARCGKSCRLRWANHLRPDLKKGAFTEEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRSGLPIYPPDICLRVMHGNQESQNVGRLTDGVNQHDDLSQTDTLNIPELDFKHVKIPLDPSIFDIPENSMFEQSSDSSHGYNMFPIMHPAKRLRESAEIMQYGPVYEEDYMSDEITNQFHGNTCCSSSSSMPLSGGMKLELPSLQYLETQQGIWDTPASPLPSLESVDTLSSGLLEPIMYQPMKHFQVQETPDEAVKCKPEWDESGEPYSPLAQSSASVLTMCSPDGPQSVENSDHNIKHELGTEFPTYCSGKDEKNMNQIHVTRPDALLDLAWFENSVVNCDGDKSFRKDAFNTFFDHPTADDLDVITSTTAVTLYTPLLAKVSFLPVFPFLNFSFFISSITLACCILRAMSTMTNKCDGRKVSKVRRSSSSVEEDSGESNIGGEGHLKKGPWTSAEDAILVDYVKKNGEGNWNAVQRHSGLARCGKSCRLRWANHLRPDLRKGAFTEEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPDVCLRVMHGNQESVNVGTLRDEANQHDDLSQTDTLDIPELDFKLVKVCPGLSYGPSICDIPESSMVEMSSDSSHGYNHMFPVMPPSKRLRESDMQYGYLDSCISDTVPIFEQYGDYTCDKISDHTQLSSPCDPILNTSDQFHGDDTYGSHATLNGNTSSSVPLPGAMKLELPSLQYFETQHGIWGTPASPLPSLESVDTMIQSPPAKPSPSDPVSPERSGLLEAIIYQPKQLQVANNNSLQATPNDCVRKEVKISTMKSKPECDEQGGPYFPLDQSAASVATNYTSISMCLVDAPQSVETIQDHNIKQELGTQYPAYVSGKKENWNQIDFTRPDALLDLGWFGSGIDCHDYDGDQFLFKDALSPFLGQDPDG* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g0078 1012 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Amo14g0078 1012 Pfam Myb-like DNA-binding domain 529 576 IPR001005 -
Amo14g0078 1012 Pfam Myb-like DNA-binding domain 582 625 IPR001005 -
Amo14g0078 1012 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Amo14g0078 1012 CDD SANT 531 576 IPR001005 -
Amo14g0078 1012 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 510 986 - -
Amo14g0078 1012 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 440 - -
Amo14g0078 1012 MobiDBLite consensus disorder prediction 836 857 - -
Amo14g0078 1012 MobiDBLite consensus disorder prediction 1 37 - -
Amo14g0078 1012 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 577 631 IPR017930 -
Amo14g0078 1012 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 527 576 IPR017930 -
Amo14g0078 1012 ProSiteProfiles Myb-like domain profile. 577 627 IPR001005 -
Amo14g0078 1012 MobiDBLite consensus disorder prediction 11 32 - -
Amo14g0078 1012 Gene3D - 528 581 - -
Amo14g0078 1012 Gene3D - 35 88 - -
Amo14g0078 1012 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Amo14g0078 1012 SMART sant 528 578 IPR001005 -
Amo14g0078 1012 SMART sant 35 85 IPR001005 -
Amo14g0078 1012 SMART sant 581 629 IPR001005 -
Amo14g0078 1012 SMART sant 88 136 IPR001005 -
Amo14g0078 1012 SUPERFAMILY Homeodomain-like 527 623 IPR009057 -
Amo14g0078 1012 Gene3D - 584 654 - -
Amo14g0078 1012 Gene3D - 91 163 - -
Amo14g0078 1012 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Amo14g0078 1012 CDD SANT 38 83 IPR001005 -
Amo14g0078 1012 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 83 IPR017930 -
Amo14g0078 1012 ProSiteProfiles Myb-like domain profile. 524 576 IPR001005 -
Amo14g0078 1012 SUPERFAMILY Homeodomain-like 34 130 IPR009057 -
Amo14g0078 1012 CDD SANT 596 625 IPR001005 -
Amo14g0078 1012 MobiDBLite consensus disorder prediction 508 527 - -
Amo14g0078 1012 CDD SANT 103 132 IPR001005 -
Amo14g0078 1012 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Amo14g0078 1012 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 510 986 - -
Amo14g0078 1012 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g0078 Amo-Chr14 879773 893780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g0078 19 298 MYB Transcription Factor Family AT5G06100 43.844 2.55e-69 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo14g0078 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g0078 K09422 - gmx:100800658 642.114