Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5789 ATGGAGGGAGGAGCGCCGCAATCCACCGGAGGAGGAGCAGGAGGTGGACCGGCGCCGTTCTTGTTGAAGACTTATGACATGGTTGACGATTCCGCCACCGATGACATCGTTTCTTGGAACAGCTCCACCAACAACAGCTTCGTTGTTTGGAACCCGCCGGAGTTCGCGCGCCTTCTTCTACCTACCTATTTCAAGCATAACAACTTTTCTAGCTTCATCCGCCAGCTTAATACCTATGGATTTCACAAAATACATCCTGAACGGTGGGAGTTTGCCAATGATGATTTTATAAAAGACCAAAAGCATCTTCTTAAGAATATCCACCGCCGGAAACCTATTCACAGTCATAGTCATCCTCCCGGCTCTGTTGTGGATCCAGAAAGGGCAGCATTTGAGGAAGAAATTGAAAAACTTAACCGTGAGAAATCTTCTATTGAATCTAATATTTTCAGCTTCAAGCAACATCAGTCAACAGCGAAGATTCATCTAGAAGATTTTCAGCAGCGATTAGATGGTATGGAGAAGAGGCAGAAACATTTGCTGAACATTTTCGAGAAGGCTCTTCAGAATCCTACTTTTGTTGAGCAGCTTTCCCAGAAAATTGAGTCCATTGATTTATCAGCGTATAACAAGAAAAGACGATTGCCTCAAGTTGATGACATGCAACCTGTTGTAGAAAGTAGTTTTGTGGACAATCCTAACAATTTTAGAATGGAATTCGGGAATGTTTTTCATCAAGATTTCTCGAACAAACTCAGACTGGAATTGTCACCAGCTGTGTCAGATATGAACTTAGTGTCACGTAGCACACAAAGTTCAAATGAACATGGGGAAAGTCCACAGAAGAAAATATCTGAAGGAGAACAAACAGGAATCCAGACAAGAACATCTGTTCCATTTGCACCAGAAACATTGGAGCTTGCTGATACCGGGGCATCTTTTACTTTCAAGATGGATTCATGTTTATCACAAAGAGTGACGAATGCTGAGAGCCCGAAACTGTGCTCATTGGAGCCAAGTAGTGAAGAAGGTGATAGTCACATATCCTGCCAACTTACTTTGGCATCGTGCCCGTTTAAGGTCAACAGAAATTCATACTCAGCAAAAGCACTCCAAATAGACTCTCAAGAAATTGGCAAGCTGGCAGAGCCTAGGTTTCATTCCAACAGTAAAGAATCCGACAGTGGAGTTTTCTCAAACCGGAACGGAGCTAATGATGCAACCAATTTGGCTTCTTCACTGGAAACTCCAAGTAACAACCAAGTTACTCAGCCAAACAGGGTAAATGATGTGTTTTGGGAACAGTTCCTTACTGAAAGACCAGGCTGCTCAGACAATGAAGAGGCAATATCCAATTACAGAGGAAACCCATGCGATGAGCAAGATGAAGGAAGGTTGAATGCAAGGAATGTTAAGAACATGGATCAGCTTACACTTTAA 1440 0.4285 MEGGAPQSTGGGAGGGPAPFLLKTYDMVDDSATDDIVSWNSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIEKLNREKSSIESNIFSFKQHQSTAKIHLEDFQQRLDGMEKRQKHLLNIFEKALQNPTFVEQLSQKIESIDLSAYNKKRRLPQVDDMQPVVESSFVDNPNNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEHGESPQKKISEGEQTGIQTRTSVPFAPETLELADTGASFTFKMDSCLSQRVTNAESPKLCSLEPSSEEGDSHISCQLTLASCPFKVNRNSYSAKALQIDSQEIGKLAEPRFHSNSKESDSGVFSNRNGANDATNLASSLETPSNNQVTQPNRVNDVFWEQFLTERPGCSDNEEAISNYRGNPCDEQDEGRLNARNVKNMDQLTL* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5789 479 MobiDBLite consensus disorder prediction 266 300 - -
Amo13g5789 479 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 13 474 - -
Amo13g5789 479 MobiDBLite consensus disorder prediction 266 302 - -
Amo13g5789 479 Pfam HSF-type DNA-binding 20 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5789 479 Gene3D - 15 111 IPR036388 -
Amo13g5789 479 Coils Coil 163 183 - -
Amo13g5789 479 SMART hsfneu3 16 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5789 479 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
Amo13g5789 479 MobiDBLite consensus disorder prediction 391 426 - -
Amo13g5789 479 Coils Coil 128 148 - -
Amo13g5789 479 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5789 479 MobiDBLite consensus disorder prediction 383 426 - -
Amo13g5789 479 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5789 479 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5789 479 PRINTS Heat shock factor (HSF) domain signature 20 43 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5789 479 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 474 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5789 Amo-Chr13 160200521 160203865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5789 20 479 HSF AT4G13980 55.745 1.31e-162 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo13g5789 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5789 K09419 - gmx:100786408 757.673