Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5786 ATGCGGTTCTATCCAGGCTTAACCATCACACCCACCGATCACCGCTTCTGCGTCCCAACCGCCACAAATCCCGTCTCTCTAAGGCCCATTATCGGCCCAATCAAATGCCCAAACCGAGTCACCTTCTCCTTCAAGAAGCCCAGGGCCACCCTTAACGGCGCTGCTGCCACCGAGGATAAGCCAGCGATGGCGGTTGCGGAGCTGAGCTTCTACGAGCTTCTAGGGATTTCGGAATCGGGGTCGCTGATGGAGATAAAGCAAGCGTACAAGCAACTCGCAAGAAAGTACCACCCGGATGTGTCTCCACCGGGTCGGCTCGAAGAGTACACGAAACGGTTCATTCGGGTCCAAGAGGCTTACGAAACCCTCTCGGATCCCACTAGGAGAGCCATGTATGATAACGACATGGCTAGGGGAGTTCACTTCGCCTTCAATGCTCGTAGAAGTTACCACCACCGTGATCAGGTGGTTGAACATAAGAGCGAGTGGAAATCTCGTTGGCAATCACAACTTTCTGAGCTGAAAAGAAGAAGTAGGAGCAAGAGCAAGGATGAAGGGAAGAACATGTCATGGGCAGCAAGAATGCGCCAACAAAGAAATGAATCATCAGATGAATCATGA 621 0.5201 MRFYPGLTITPTDHRFCVPTATNPVSLRPIIGPIKCPNRVTFSFKKPRATLNGAAATEDKPAMAVAELSFYELLGISESGSLMEIKQAYKQLARKYHPDVSPPGRLEEYTKRFIRVQEAYETLSDPTRRAMYDNDMARGVHFAFNARRSYHHRDQVVEHKSEWKSRWQSQLSELKRRSRSKSKDEGKNMSWAARMRQQRNESSDES* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5786 206 ProSiteProfiles dnaJ domain profile. 69 136 IPR001623 -
Amo13g5786 206 ProSitePatterns Nt-dnaJ domain signature. 113 132 IPR018253 -
Amo13g5786 206 CDD DnaJ 70 125 IPR001623 -
Amo13g5786 206 Gene3D DnaJ domain 56 170 IPR036869 -
Amo13g5786 206 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 38 203 - -
Amo13g5786 206 Pfam DnaJ domain 70 133 IPR001623 -
Amo13g5786 206 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 38 203 - -
Amo13g5786 206 SMART dnaj_3 68 128 IPR001623 -
Amo13g5786 206 MobiDBLite consensus disorder prediction 172 190 - -
Amo13g5786 206 MobiDBLite consensus disorder prediction 172 206 - -
Amo13g5786 206 PRINTS DnaJ domain signature 71 89 IPR001623 -
Amo13g5786 206 PRINTS DnaJ domain signature 89 104 IPR001623 -
Amo13g5786 206 PRINTS DnaJ domain signature 108 128 IPR001623 -
Amo13g5786 206 SUPERFAMILY Chaperone J-domain 66 143 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5786 Amo-Chr13 160075060 160077623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5786 71 133 C2H2 Transcription Factor Family AT1G74250 46.970 1.32e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5786 - - adu:107482289 404.445