Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5768 ATGGAGTGCAAGAGCATCCAAAGCATGGCATCAAGTAGCACAAGACCCAAATATGACGTGTTTGTGAGCTTCAGAGGTGAGGACGTACGCAACACCTTCGCTGATCATCTCTTTGCCGCTTTCCGTAAAAACGGAATAGTTGCATTCAGGGACGATAGGAATCTGATGCAAGGACAGCACATCTCCACTGAGCTGGTACAAGCAATTGAAGGATCTCAGGTTCTCATTGTCATCTTCTCTAAGAACTATGCTACTTCTTCATGGTGCTTGCAGGAACTCGCTAAGATGCTTGATTGCAGCAATACGATAACAGAATCAAATCTGTTGCCTATTTTCTATGATGTTAGTCCGTCTGAGGTGCGTAAACAGACCGGAAACTATGGGAAAGCGTTGGCTGAGCATGAAGAAAGATTCAAAGATAACTCAAATATGGTGCAACAATGGAGGGAATCTCTGCTGCAAGTCTCTAATCTCTCTGGTTGGGATATACAAAATAAGCAGGAGAATGGAGAGATTGAAAAAATTGTTAAAAGGGTGAGAAGCAAATTAGGTTGCAATTCGGTAAGTGTGGATGGGTTGGTTGGGATGCAATCTCGTGTGGAAGAATTGGAAAACCTGATTGATTTCAACTCCGATAATGAAGTTCGGGTTGTAGGCGTTTGTGGCATGGGTGGGATAGGAAAGTCAACACTTGCTAGGGTCGTGTATGGTAGAAACCTTCATAAATTTGGTGCTCATTSTTTTGTTGAYGATATAAGCAAAGTTTTTCGTGRAGGTGGTCTACTTTCTCTACAAAAGCAACTTGTTTGTCAAATTACAAATGGAGAGATCCAAGATATATACAATCATTACSARGCTRAGAGTTTGATRAAAACTAKRCTACGYTGTCAAAAGGCTCTGATTGTTCTAGATAATGCCGATGAAGTTGAACMGTTAGAGAACCTTGGCGTGACTCGTGATTGTCTATGTCCAGGAAGCAGAATTGTAGTAACTTCTAGAGATCAACATGTCTTGAACTCTTTTGGGCTWGATSAAACATACAAAGTTCAACTCTTGAATGASGATGAAGCTCATCAATTGTTTTGTGAAAAAGCTTTTGATGATAATATAAYTATGAGTYGTGACGAGATTAGCAGAGAGTACAAAAAGTTGACGGATCTTGCACTTRAATATGCTCAAGGCCTTCCCTTGGCAATTAAAGTTTTGGGGTCATATCTACGCRGTCGAGATATCTCTGTATGGAGAAGTGCCYTRGATAGACTGAAARATAATCCAAAGAAGGAAATCGCAGATGTGCTTCAACTTAGTTTTGATGGATTGGAACCCCTCGAAAAGGAAATATTTTTGGACATTGCTTGTTTCTTTGACTACCAACATAAATGGTTTGTGGAAGACTTGTGGTACTGTCGGGGTCTTCATCCAAAGATTGGAATAAGTGTCCTCATCGATAAATCATTAATAACAATTGATGAAGGCTATATTAGAATGCATGACCTGTTGCAAGAGTTAGGCATGAGAATAGTTCGGCAAAGTGCTCCAAATGAGCCTTGGAAGTGGAGTAGGATATGGTGCAAAGAGGATTTTCAACGTATTATGTTTGGAAATACGGTAATTGATGATGTTAAAGCCATGCAATTGATGGAACCATACCAAGGAAGAAATATGACATTAAGAGCAGAAATATTATCAAGAATGAAACGACTTGAATTTCTCCAAATACAAAATGTTAGTTTTTTTGGAAGTTTTAATAGCATTTCTAGCGAACTGCGATATCTCGAGTGGAAATATTATCCGTATACGGATTTTCCATCATGTTGTAAGCTATCCAAGCTTTCGAAATTAGTCTTGCGAAGGAGCAACATCAAGCAAATATGGGATGGCACAATGTGTCTGGATAATTTGAAGAAATTGGATCTCTCTGACTCTGAGAATCTTGTGAAGATTCGAAACCTTAGCCAGGCTCCAAATCTTGAGTTGCTGTTCGTTAGAAGATGTAGAAAGCTTAAGCACATACATCCATCAACCGGAGACCTAAGAAAACTTGTTGTGTTAGATTTGAGTGGGTGCACAAGTTTAACGAGTTTTCCCGTCACTGTATTCGGTATATCTTCACTAGAAGAGGTAAATCTGAGCGGGTGCTCAAGATTATTTGGTGGGAAAGAGTTGGAGAATGGAAGTGAGAGTAGTATCCAATGCCAATCCACAGTATGGTCCACTTTTAAAAGGCTTAAGCCTAGGTTACCATTCCATTTCTTCAATTCTTTTAAAAGTAGATACAACCATGTCTTCCATATGTGGAGGCTTTCTGTCGCTCGCTTAAGCTGCGTGTATTATCTTGACCTAAGTTATTGTAATCTGCATACTATCCCTGAGGCCATATCATCCTTACATTATTTAGAGATGTTAGTTTTCATGGGAAACAATATAGTTAGAGTACCTGATTTCATAAACAAGCTTCCCAGACTGAGAGTGTTGAAGTTAGACAACTGCAAACGGCTAATGTATGTAGATGAGTTCCCATTGCCATTACCCTATCCAGCGGCAGAGCGAACAGAACTTGTGAAAATGATAGAATTGAGTATGTTCAGCTGCCCGAAAATAGTAGAGAAGGAAAGGTTGAGTGGAATGGGTAGTTCATGGATAAGAGAGTACATTAAGGTACACAATGAATCCACTGGTAGACTTTCTATTGTAATACCAGGGAGTGGAGGTCCAATTCCAAGGTGGTTTAAGCATCAGAATAAGGGGGCGGATAATTCAATGTGGATAGAATCATTTCCTAATGCCAATGACAACAATTGGATTGGCATTGCCCTTTGGGCCGAGATTGTTGTTCAGTTTGCACCACGCATCTTCATTGAGCTCTGCTTTTACGACCAAACAGGAAAAGTCAATTTCAATCACATTGTTGTTTTGCTTCAAAAGGAGGAGGAGGTGAGGGGTGAATTGGTTCAGCTCTGCCTATTCTATTTTTCTCGCCAACTACTCACTCTGGATGGAAAGCAGCATGATCTTCATGGATCCCACTTTAAATTCGAAGTAGATTACCACAGCTATGTGGAAGTGAAGAAATGTGGAATGCGTGTGGTACTGAACCAGGATATGGAGTAA 3111 0.3976 MECKSIQSMASSSTRPKYDVFVSFRGEDVRNTFADHLFAAFRKNGIVAFRDDRNLMQGQHISTELVQAIEGSQVLIVIFSKNYATSSWCLQELAKMLDCSNTITESNLLPIFYDVSPSEVRKQTGNYGKALAEHEERFKDNSNMVQQWRESLLQVSNLSGWDIQNKQENGEIEKIVKRVRSKLGCNSVSVDGLVGMQSRVEELENLIDFNSDNEVRVVGVCGMGGIGKSTLARVVYGRNLHKFGAHXFVDDISKVFRXGGLLSLQKQLVCQITNGEIQDIYNHYZAXSLXKTXLRCQKALIVLDNADEVEXLENLGVTRDCLCPGSRIVVTSRDQHVLNSFGLDXTYKVQLLNXDEAHQLFCEKAFDDNIXMSXDEISREYKKLTDLALXYAQGLPLAIKVLGSYLRXRDISVWRSALDRLKXNPKKEIADVLQLSFDGLEPLEKEIFLDIACFFDYQHKWFVEDLWYCRGLHPKIGISVLIDKSLITIDEGYIRMHDLLQELGMRIVRQSAPNEPWKWSRIWCKEDFQRIMFGNTVIDDVKAMQLMEPYQGRNMTLRAEILSRMKRLEFLQIQNVSFFGSFNSISSELRYLEWKYYPYTDFPSCCKLSKLSKLVLRRSNIKQIWDGTMCLDNLKKLDLSDSENLVKIRNLSQAPNLELLFVRRCRKLKHIHPSTGDLRKLVVLDLSGCTSLTSFPVTVFGISSLEEVNLSGCSRLFGGKELENGSESSIQCQSTVWSTFKRLKPRLPFHFFNSFKSRYNHVFHMWRLSVARLSCVYYLDLSYCNLHTIPEAISSLHYLEMLVFMGNNIVRVPDFINKLPRLRVLKLDNCKRLMYVDEFPLPLPYPAAERTELVKMIELSMFSCPKIVEKERLSGMGSSWIREYIKVHNESTGRLSIVIPGSGGPIPRWFKHQNKGADNSMWIESFPNANDNNWIGIALWAEIVVQFAPRIFIELCFYDQTGKVNFNHIVVLLQKEEEVRGELVQLCLFYFSRQLLTLDGKQHDLHGSHFKFEVDYHSYVEVKKCGMRVVLNQDME* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5768 1036 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 161 IPR035897 -
Amo13g5768 1036 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 184 1035 IPR044974 GO:0006952
Amo13g5768 1036 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 184 1035 - -
Amo13g5768 1036 Gene3D - 351 441 IPR042197 -
Amo13g5768 1036 SMART till_3 17 158 IPR000157 GO:0007165
Amo13g5768 1036 Pfam NB-ARC domain 199 427 IPR002182 GO:0043531
Amo13g5768 1036 Pfam C-JID domain 903 1035 IPR045344 -
Amo13g5768 1036 Pfam TIR domain 17 182 IPR000157 GO:0007165
Amo13g5768 1036 Gene3D - 2 156 IPR035897 -
Amo13g5768 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 451 IPR027417 -
Amo13g5768 1036 Gene3D Ribonuclease Inhibitor 553 740 IPR032675 -
Amo13g5768 1036 Gene3D Ribonuclease Inhibitor 753 873 IPR032675 -
Amo13g5768 1036 ProSiteProfiles TIR domain profile. 16 183 IPR000157 GO:0007165
Amo13g5768 1036 Gene3D - 174 344 IPR027417 -
Amo13g5768 1036 PRINTS Disease resistance protein signature 217 232 - -
Amo13g5768 1036 PRINTS Disease resistance protein signature 293 307 - -
Amo13g5768 1036 PRINTS Disease resistance protein signature 392 406 - -
Amo13g5768 1036 PRINTS Disease resistance protein signature 676 692 - -
Amo13g5768 1036 SUPERFAMILY L domain-like 557 838 - -
Amo13g5768 1036 Coils Coil 1028 1036 - -
Amo13g5768 1036 SUPERFAMILY "Winged helix" DNA-binding domain 428 528 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5768 Amo-Chr13 159789130 159793620 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5768 13 805 WRKY Transcription Factor Family AT4G12020 26.579 5.32e-64 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5768 - - ahf:112792657 1817.74