Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5764 ATGGCAGCACAAAGTTCTGATGCTTGTCCTTCTGAATCCTCTAGCATCTCTGCCACCTTCCAAGGGATTGATAACAACACAAGGGACAATGATCTAGCTTCTGAACCAGACCAAGCCTCAAATTCCAATAATAATATGGAAAGGATGTTGGATTTTGTGAAGCTCTCCAACAACGATGTTTCATCGATTCGATGTTCTTCCAACGTGAAAGAGCTTGATTTTTTCAACACCGGGAAGAGGGTGATGGGATCATCGTCAACTTGGACTAATAATAATAATGTTGACGAAGGAAAAGATGAAAACACTGAAGAAAAAGAAAGGACTTCAGAGCCGAAAACTTTCTCTTGCAATTTTTGCAAGAGAGAGTTCTCGTCCTCTCAAGCCCTTGGCGGGCACCAAAATGCCCACAAACAAGAGCGTGCGATAGCGAAACGTCGCCAAGGGATGGACACGGGTGCTTTTGGTCACCCTCACTTTCCATATTATCCTTACCATAGCTTTTTCACACCATCTTTATATGGGTCCTATAATAGGACACTTGGGGTAAGAGTGGAGTCTATGATTCACAAACCTTCTTATCCTTGGTCTGCTGGTCTTAGGTTTGGTCGTAATCATAATTGGTCAACGCAGGGGATTCTTGGTTCATCATCATCATTAGCACTTGATAGGTTAAGTATTGAGGGTTTGCAACCAAATAATGAAGTAGGCGGGGTTAGTGGAATTCAAGCAAGTTCTTCGAATTTGAGAAAAGAAGATGATAATGGTGGTAATGGAAATACTTCCCAATTAGGAGATTCTTCTACCAACAATGTTGCTACAAGTCTCACTCGCCATGCAAAGGATGATCAGGATCCCAAGCCAGATAATGAACCCTCTAGTTCTGAGTCTCCGGGGCTTGATTTGTCACTTAAGCTTTAA 918 0.4237 MAAQSSDACPSESSSISATFQGIDNNTRDNDLASEPDQASNSNNNMERMLDFVKLSNNDVSSIRCSSNVKELDFFNTGKRVMGSSSTWTNNNNVDEGKDENTEEKERTSEPKTFSCNFCKREFSSSQALGGHQNAHKQERAIAKRRQGMDTGAFGHPHFPYYPYHSFFTPSLYGSYNRTLGVRVESMIHKPSYPWSAGLRFGRNHNWSTQGILGSSSSLALDRLSIEGLQPNNEVGGVSGIQASSSNLRKEDDNGGNGNTSQLGDSSTNNVATSLTRHAKDDQDPKPDNEPSSSESPGLDLSLKL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5764 305 MobiDBLite consensus disorder prediction 85 109 - -
Amo13g5764 305 Gene3D Classic Zinc Finger 90 153 - -
Amo13g5764 305 MobiDBLite consensus disorder prediction 1 46 - -
Amo13g5764 305 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
Amo13g5764 305 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Amo13g5764 305 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 305 - -
Amo13g5764 305 MobiDBLite consensus disorder prediction 235 276 - -
Amo13g5764 305 PANTHER ZINC FINGER PROTEIN JAGGED 5 305 IPR045320 GO:0003700
Amo13g5764 305 MobiDBLite consensus disorder prediction 230 305 - -
Amo13g5764 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5764 Amo-Chr13 159715496 159716413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5764 108 208 C2H2 Transcription Factor Family AT5G10970 51.456 3.41e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g5764 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5764 - - ahf:112735686 512.686