Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5718 ATGGATGGACCTTCCATCAGGTTCCCCTTCAGGCTGAAAGGAACACAACCAGAATGGTGTAGCCATGATTCTTCCTTTGATCTTTCTTGCACTGATACCAATAACACAATGCTGCAGCTCCCATTCTCTTTCAAGGCCTTAGTCAAAAGCATCAACTATTCATCACAACTCATAACTCCCTCTTATCCTCAAGGCTGCTCCATTCACACACACATTCCACTGTTTGACTTTTCTCTTTCTCCTTTTAGCTTCATTGATGGCTCTCTACTCCATAATTATGCATTGTTCAATTGTTCGAGGATGGATAAGGAATACTTCTTAGCATCTAGAAGCTTTTCTTGCCTTCATGTACTTTTCAATTATTCTCTTGCACTAGTATCCGCAGCAGTGTACCATTGCCTAGTTCTTTGTTTGACAGGAACATTGATACTGTTCTTAATTGGTTCCAACCGGATTGCAAAGACTGCGAAAGTGAGAGGAAACGAATCCAATCATAGGCTTGAATGTATAGGCCTCCCCCATAGTACTAAGGGTTTACATAGAGGGAAAAAGCTTGCTGGTGAAATTCTAGGCCCTTTTATGTTTCTATTTGTTGGAGTGGCAGCTTATTGTGTCTATATCAAAAAGCTTTTGGAGGACTACAAAGCACTTAAGCCTGCAAGGTACTCTTATGCAGATATAAGAAGAATTACAAATCAGTTTAGCGAAGAATTGGGGCAAGGAGCATATGAACCTGTCTTCAAAGGGAAGCTAGGGGATGAAATTGAGGTTGCTGTAAAGGTCTTAAATGCTTCATCAGGTAATGGCCAAGAGTTCATCAATGAAATGGAAGCAATGTGTCAAATTCACCATGTCAATGTGGCTCGCTTGGTCAGATTTTGTTCTGATGGATCTAGAAGAGCTTTGCCTCGTAATGTACTTCTAGACAGTGATTTCACACCAAAACTCTCTGATTTTGGTTTAGCAAAGCTCTGCCCAAGGATCAAAGTATAG 993 0.4079 MDGPSIRFPFRLKGTQPEWCSHDSSFDLSCTDTNNTMLQLPFSFKALVKSINYSSQLITPSYPQGCSIHTHIPLFDFSLSPFSFIDGSLLHNYALFNCSRMDKEYFLASRSFSCLHVLFNYSLALVSAAVYHCLVLCLTGTLILFLIGSNRIAKTAKVRGNESNHRLECIGLPHSTKGLHRGKKLAGEILGPFMFLFVGVAAYCVYIKKLLEDYKALKPARYSYADIRRITNQFSEELGQGAYEPVFKGKLGDEIEVAVKVLNASSGNGQEFINEMEAMCQIHHVNVARLVRFCSDGSRRALPRNVLLDSDFTPKLSDFGLAKLCPRIKV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5718 330 ProSiteProfiles Protein kinase domain profile. 232 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5718 330 SUPERFAMILY Protein kinase-like (PK-like) 217 327 IPR011009 -
Amo13g5718 330 Pfam Wall-associated receptor kinase galacturonan-binding 4 58 IPR025287 GO:0030247
Amo13g5718 330 Gene3D Transferase(Phosphotransferase) domain 1 303 329 - -
Amo13g5718 330 Gene3D Phosphorylase Kinase; domain 1 207 302 - -
Amo13g5718 330 Pfam Protein tyrosine and serine/threonine kinase 234 298 IPR001245 GO:0004672|GO:0006468
Amo13g5718 330 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 302 IPR045874 GO:0004672
Amo13g5718 330 PANTHER RECEPTOR-LIKE KINASE 303 326 - -
Amo13g5718 330 PANTHER RECEPTOR-LIKE KINASE 2 302 - -
Amo13g5718 330 PANTHER RUST RESISTANCE KINASE LR10-RELATED 303 326 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5718 Amo-Chr13 159249209 159250669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5718 212 327 Receptor kinase-like Gene Family AT1G66910 36.047 1.42e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo13g5718 PK_Tyr_Ser-Thr 1.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5718 - - mtr:MTR_4g073230 287.73