Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5709 ATGTCAGAGGGATTTGAGATTCATCAAGAGAATAATGAAGGAAGTGGCGGCAAGAGTAGTAATGATAATGAGGGTGAGGAAAATTCATTTGACTTGAATGAAGGAGCGGGTATGAGTGATGATGAGGAATTGGAAGAAGAGAATAATAATAATGAAGCAAAGGAGGATGAAGAAACAAACCCAAGTAGCAGCAGCACAGCATCAAGAGAAGGGAAGAGAGGGAGTGGTGTGAGACAATATGTGAGATCAAAGATGCCAAGGCTTCGTTGGACTCCTGATCTTCATCTCTCCTTTGTCCATGCTGTTCAGAGGCTTGGAGGTCAAGAAAGAGCAACACCTAAATTGGTGCTTCAGTTAATGAATGTCAGAGGCCTAAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGATGACTCTGGCCAAGTAGTAAGAAGTGAAAGACAGAGAAGCAAGCATGAAGTAGGTGGTGTGGCGTATGAGACGATGATGAAGAGGAGTAGTCCTCATCAACATTTCAAGATGGGAAACGGTGGAATTTTTCTTACTACTAACTACACCACCACTACTCCATTCTCCTCCCTCCCACATTCAAAGCCCACAAACCACCACCTATGGCACTTGAATCATCAAATACCTTCTATTAGAAGACCAATAACACCACCCTTGCAAACTCAACTAGCCAGCAGAATTACGCCCATGAGACCAAGCCGATTTCTTGAAGAGAAAAAGTGGCCTCCTTTTCATCACTGGAAATTCAAAAGGCTTCCTAATACCAACACCATTACACTACCCTCATCACAATCCTCTCCATTTGCCACCACCTCTGACTTCATCACCTTTGGAGACAACACCACCACCACAATCAGAGACTATCTATCAAACTCCAATACTTTCAAGTTGAATAATCAAGACAAGCAGTTGCAGCACAAAGAGAAGCAATGGGTTCCAGATTTGCAACTGGGTTTGAGTCATCACAAAGATGGAGACAACAATGATGGCACAGGAACCCCAGAAATTAGCACTAAACTTTCACTTTCATAG 1059 0.4297 MSEGFEIHQENNEGSGGKSSNDNEGEENSFDLNEGAGMSDDEELEEENNNNEAKEDEETNPSSSSTASREGKRGSGVRQYVRSKMPRLRWTPDLHLSFVHAVQRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDDSGQVVRSERQRSKHEVGGVAYETMMKRSSPHQHFKMGNGGIFLTTNYTTTTPFSSLPHSKPTNHHLWHLNHQIPSIRRPITPPLQTQLASRITPMRPSRFLEEKKWPPFHHWKFKRLPNTNTITLPSSQSSPFATTSDFITFGDNTTTTIRDYLSNSNTFKLNNQDKQLQHKEKQWVPDLQLGLSHHKDGDNNDGTGTPEISTKLSLS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5709 352 MobiDBLite consensus disorder prediction 1 84 - -
Amo13g5709 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 142 IPR017930 -
Amo13g5709 352 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 141 IPR006447 GO:0003677
Amo13g5709 352 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 193 - -
Amo13g5709 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 230 352 IPR044848 GO:0003700
Amo13g5709 352 MobiDBLite consensus disorder prediction 1 23 - -
Amo13g5709 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 193 IPR044848 GO:0003700
Amo13g5709 352 Gene3D - 85 142 - -
Amo13g5709 352 SUPERFAMILY Homeodomain-like 84 140 IPR009057 -
Amo13g5709 352 MobiDBLite consensus disorder prediction 36 53 - -
Amo13g5709 352 MobiDBLite consensus disorder prediction 327 352 - -
Amo13g5709 352 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 230 352 - -
Amo13g5709 352 Pfam Myb-like DNA-binding domain 88 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5709 Amo-Chr13 159107704 159110017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5709 77 147 G2-like Transcription Factor Family AT2G42660 81.690 2.56e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo13g5709 Myb_DNA-binding 7.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5709 - - adu:107482239 658.677