Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5703 ATGGATCAGGCAAGAAGCGAAGACAGTGCTGAGGTGTTGGATAATGTAGTTGGAGAAGGAGTTGCAACTGATGCAGGAGATGGTAGTGAATTGGTTGAGAGAGATGATGTAGTTGGAGAAAATGGAACTTCAGATCTGGGTTTGAATACGGAGCTAGAGGAGGAGGAGGAGACTCGAGTGGTTAAGGATCAGGAAACAGCTGACTTGCAAAAAATCAGTGATACATTGTGTGGGGTTGAGCAAGGAACTAGTTATAGCTCAAGAAATTTGGTCAGTGGGGAGGTTGTACTTGAGACCTGTGTTGTAATAGATCCTCCTGCTCAGATCGAGCATGTCCATGGAAAATCGAAATCAAAAGCCAATGAATCAGGGTTGAGCAAGCTAGCCATGAAAGCACCAAAGGCAGTGTCTGAGACAGATAAAAATTCATGTGCAATTGATATAAACAAAGAGTTTAGTGAGAACTTGGAAGGTGAAATGATTTGTAGAATTTGTCATCTGGCATCAGGGCAACCAATAGAAGCAATGATGGTTGGGACTGCAAACAATGAAACTAGTACAGATTTGATTCAACTTGGTTGTGCATGTAAGGATGAGCTAGGCATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAGCAGGTTGTTGAAATATGATCGAAGATGCAAAAAAAAATGTTTCAGAATCAACAGTTATCAATCATTCATTTATGGAAGAGTGGAACGAAAGTAG 744 0.414 MDQARSEDSAEVLDNVVGEGVATDAGDGSELVERDDVVGENGTSDLGLNTELEEEEETRVVKDQETADLQKISDTLCGVEQGTSYSSRNLVSGEVVLETCVVIDPPAQIEHVHGKSKSKANESGLSKLAMKAPKAVSETDKNSCAIDINKEFSENLEGEMICRICHLASGQPIEAMMVGTANNETSTDLIQLGCACKDELGIAHSHCAEAWFKLKGSRLLKYDRRCKKKCFRINSYQSFIYGRVERK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5703 247 SMART ringv_2 161 218 IPR011016 GO:0008270
Amo13g5703 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 232 IPR013083 -
Amo13g5703 247 ProSiteProfiles Zinc finger RING-CH-type profile. 154 233 IPR011016 GO:0008270
Amo13g5703 247 PANTHER ZINC FINGER, RING-CH-TYPE 1 221 - -
Amo13g5703 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 221 - -
Amo13g5703 247 MobiDBLite consensus disorder prediction 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5703 Amo-Chr13 159022942 159025594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5703 162 219 C3H Transcription Factor Family AT5G05830 46.552 1.49e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5703 - - gmx:100791129 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5703 13 159022942 159025594 Amo20g0251 20 3427563 3428294 PCT
Amo20g0251 20 3427563 3428294 Amo13g5703 13 159022942 159025594 PCT