Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5695 ATGGATAGTAAGTTGAGGAACAGGAGTAGTAGGAGTAGCAGAAATCTGTATATGAAGGAACAAGAAGACAATGATGGTTCGGACTCCCCTCCTTCAAATTCCACCCTCTTCAACATTGATGCCTTGGTTACTTCTTCTCCATCATCTTCAAGTAAGAGAAGGCGAGGCGTAGAAAAAAGGGTGGTGCATATAAGAATAAAGGAGGGAGAAGGACCGAGGCTAAAAGGGGAAAACAACACTCCACCACCCTCAGATTCATGGGCATGGAGGAAGTATGGCCAGAAACCCATAAAAGGTTCCCCTTACCCGAGAGGATACTACAGATGTAGCAGCTCAAAGGGGTGTCCGGCGAGAAAGCAGGTAGAGAGAAGCCGAGTGGACCCCACTATGCTGGTAGTTACATATTCATGCGAACACAACCATCCATGGCCTTCTTCACGAAACCACAATAGATCGTCTAATAAGAAGCCCCAGCCCTCCGCCGAGGACCTACTTGTGGACCCGGTCGAACCGGATCTTGAGGGCCACGACTCCATCATTCATGACCTTGGCTGGTTCCGTGACATCTCGGGGGTTCCCACCACGTCTTCACCCGCCGTACTGGACAGCCCCATATTCTCTGGCTACGACGATGCGGATGTGGCGGCCTCGGTGGTGCTGCCCATGGGGGACGACGACGACTCGCTCTTTGCGGACCTCGGAGAGCTGCCCGAGTGCTCCCTTGTGTTCCGGCGGGGGCTCTTGGAGACGGCGGAGCAACGGCGGCGCTGGTGTGGGACCCCAAGTTGA 789 0.5399 MDSKLRNRSSRSSRNLYMKEQEDNDGSDSPPSNSTLFNIDALVTSSPSSSSKRRRGVEKRVVHIRIKEGEGPRLKGENNTPPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTMLVVTYSCEHNHPWPSSRNHNRSSNKKPQPSAEDLLVDPVEPDLEGHDSIIHDLGWFRDISGVPTTSSPAVLDSPIFSGYDDADVAASVVLPMGDDDDSLFADLGELPECSLVFRRGLLETAEQRRRWCGTPS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5695 262 MobiDBLite consensus disorder prediction 142 159 - -
Amo13g5695 262 ProSiteProfiles WRKY domain profile. 84 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g5695 262 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 19 260 IPR044810 GO:0003700
Amo13g5695 262 MobiDBLite consensus disorder prediction 27 51 - -
Amo13g5695 262 Pfam WRKY DNA -binding domain 85 142 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g5695 262 PANTHER OS01G0750100 PROTEIN 19 260 - -
Amo13g5695 262 SMART WRKY_cls 83 143 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g5695 262 MobiDBLite consensus disorder prediction 142 163 - -
Amo13g5695 262 MobiDBLite consensus disorder prediction 1 26 - -
Amo13g5695 262 SUPERFAMILY WRKY DNA-binding domain 80 144 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g5695 262 MobiDBLite consensus disorder prediction 1 102 - -
Amo13g5695 262 Gene3D WRKY domain 72 145 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5695 Amo-Chr13 158887814 158891418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5695 20 244 WRKY Transcription Factor Family AT1G29280 50.826 1.12e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo13g5695 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5695 - - ahf:112734976 499.204