Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5687 ATGGCTTCTGGGGTTATATTCTCGTCGCTGCGGCGTCGCCGGTCGCCGTCGCTAGAGGCCTTTCTGGCGCCGGTGGACCTTTCCGACGAGGCACTCATCCGGACCGTCGTTGCAGTCGCCGGCGACCTCGTCACTGGCTTCTCCGATCACCGATTATCCTTCCAGCGCAAGAACTCTCGCTCCCTAATCCGAAAGGTCGAGGTTTTTCAGCTTCTATTAGAGTCACTGAGGGATTCAAGTGTGAGTCTTCTCCCCACGGCGGCGCTCTGCTTGAGGGAGCTCTTTTTGGTGGTATATCGTTCCAAGATTCTCCTTGATTACTGCGCGCAATCGAGTAAGTTATGGCTTTTGCTTCAGAACCACTCTATTTCCGGTCACTTCCATGATTTGGGTCAAGAATTTTCGACCCTTTTGGATGTTTTCCCTGTTAGGGCCGTTGACCTTAGCGACGATGTTAGGGAACAGATTGAGTTGATGAGGAGACAGTCTAGGAGGGCCAAATTGTTTGTGGATAAGAAGGATGATGGCCTTAGAATAAAGTTCTTTTCTTTTCTTGAGGCATTCGAGAATGGGAGGATTCCTTGTTCTGATGAATTGAGGCGTTTCTATGTTGATGAGTTGAAGATTAGTGATGCTAGGAGTTGTAGGGCTGAGATTGAAGCTTTGGAAGAGCAGATTGTTAATCATGAGGGTGATATTGAGCCAACCGTTTCTGTGCTTAATGGACTGGTGGCAATGACGCGGTGTAGCAGGTTTCTACTCTTTCGGTTTGAGGAGGAAGATGATGACTTTGGTTTGGGGAATGAGAATCAGAAGAAGGCCAAGGTGAGATTGGTTAATCAAGATGTCGTGGACAAGATTTTGACCATTCCTAAGGACTTTTGCTGTCCAATATCATTGGATTTGATGCGTGATCCGGTGATAATATCAACAGGTCAGACTTATGATCGGAGTTCCATATCAAGGTGGATGGACGAAGGGCATTCTAACTGTCCAAAAACAGGCCAAACACTTGCACACAACCGGCTTGTTCCTAACCGCACACTTAGGAATTTGATCGTGCAGTGGTGCAGTGCACATGGAATACCCTATGATCCACCAGAGGTAATTGATCCATCTGCTGAAACTTTTGCCTCAGCTTGTCCTGCCAAAGCTACCATGGAAGCCAATAAAGCAACTGTGGCGCTTCTCATTCAGCAGCTAGCTAATGGGTCACAATCTGGAAAGACTGTAGCTGCAAGGGAGATAAGATTGCTTGCAAAAACTGGAAAAGAGAATCGTGCCTTCATTGGAGAGGCAGGGGCAATTCCTTATCTTCGGGATTTACTTTCTTCTCCTAACACGGTCGCGCAGGAGAACTCAGTAACTGCATTGCTCAACCTATCCATTTTTGAGAGAAACAAGAGTCGCATCATGGATGAAGCAGGGTGCTTGGGATCAATAGTTGATGTTTTGAAATTTGGACAAACAACTGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGTCTCTCTGCTGTCCATGACTATAAAAAAAGGATTGCAGATAATGTGGGAGCTGTTGAAGCACTGGCAAGTCTGTTGCAAGAGGGAACCCGAAGGGGGAAGAAGGATGCTGTGACAGCATTGTTTAATCTTTCCACCCATACTGAGAACTGCGCAAGGATGATAGCAGCAGGAGCAGTCACGGGCTTAGTCGATGCATTGGGAAACGAAGGAATTGCTGAGGAAGCAGCAGGTGCCTTGGCCTTGATTGTCCGGCAGCCACTTGGGGCAAAAGCGGTGGTGAGTGAGCAAGCAGCAGTGGCTGGATTGATAGGAATGATGCGTTGTGGAACACCAAGAGGCAAAGAGAATGCGGTTGCCGCATTGCTGGAGTTGTGCCGCAGCGGTGGCACAGCTGCAACTGAAAGGGTGGTTAGGGTGCCGGCTTTGGCAGGATTACTTCAAACCCTGCTCTTCACAGGAACAAAGCGAGCGAGACGAAAAGCAGCTTCACTTGCAAGAGTGTTTCAGAGATGTGAGAATGCCTCTCTGCATTATGGTGGATTGGGCCTAGGATATGCATTGGCTAGTAATTCAGCATCAACAAGGGATACAACAATTTTTGCTGGTGATGTTTCAGTACCAATGTCCATTTCTCTACCTGTATTGTAG 2157 0.478 MASGVIFSSLRRRRSPSLEAFLAPVDLSDEALIRTVVAVAGDLVTGFSDHRLSFQRKNSRSLIRKVEVFQLLLESLRDSSVSLLPTAALCLRELFLVVYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLGQEFSTLLDVFPVRAVDLSDDVREQIELMRRQSRRAKLFVDKKDDGLRIKFFSFLEAFENGRIPCSDELRRFYVDELKISDARSCRAEIEALEEQIVNHEGDIEPTVSVLNGLVAMTRCSRFLLFRFEEEDDDFGLGNENQKKAKVRLVNQDVVDKILTIPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHSNCPKTGQTLAHNRLVPNRTLRNLIVQWCSAHGIPYDPPEVIDPSAETFASACPAKATMEANKATVALLIQQLANGSQSGKTVAAREIRLLAKTGKENRAFIGEAGAIPYLRDLLSSPNTVAQENSVTALLNLSIFERNKSRIMDEAGCLGSIVDVLKFGQTTEARENAAATLFSLSAVHDYKKRIADNVGAVEALASLLQEGTRRGKKDAVTALFNLSTHTENCARMIAAGAVTGLVDALGNEGIAEEAAGALALIVRQPLGAKAVVSEQAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGTAATERVVRVPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGLGYALASNSASTRDTTIFAGDVSVPMSISLPVL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5687 718 PANTHER U BOX DOMAIN-CONTAINING 11 695 - -
Amo13g5687 718 CDD RING-Ubox_PUB 294 336 IPR045210 -
Amo13g5687 718 SMART arm_5 423 463 IPR000225 GO:0005515
Amo13g5687 718 SMART arm_5 508 548 IPR000225 GO:0005515
Amo13g5687 718 SMART arm_5 549 587 IPR000225 GO:0005515
Amo13g5687 718 SMART arm_5 588 629 IPR000225 GO:0005515
Amo13g5687 718 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Amo13g5687 718 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Amo13g5687 718 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515
Amo13g5687 718 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Amo13g5687 718 Gene3D - 391 669 IPR011989 -
Amo13g5687 718 Coils Coil 212 232 - -
Amo13g5687 718 SUPERFAMILY RING/U-box 283 364 - -
Amo13g5687 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 364 IPR013083 -
Amo13g5687 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Amo13g5687 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Amo13g5687 718 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 695 - -
Amo13g5687 718 SUPERFAMILY ARM repeat 393 671 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5687 Amo-Chr13 158809579 158812512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5687 1 718 U-box Gene Family AT1G29340 65.897 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5687 - - mtr:MTR_2g018010 1082.4