Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5686 ATGGATGAAGCTCAGAGCAGTTCCAATTCCCTGCCACCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACTGATCCCATTGTTTCTTGGAGTGCCTCTAATAGAAGTTTCATTGTGTGGAATCCTCCGGATTTCGCTAGGGATTTGCTGCCTAGATTCTTCAAGCACAATAACTTCTCAAGCTTTATCAGGCAGCTGAACACTTATGGTTTTAAGAAGGTTGACCCTGAACAATGGGAATTCGCAAATGATGATTTTGTAAGAGGTCAACCACATCGCATGAAGAATATCCACAGACGAAAACCGGTTCATAGTCATTCTTTACAGAATCTTCAGGCGCAAGCTCCACTGACAGAATCAGAAAGGATGAGTTTACAGGATGAAATAGAGAGGCTTAACCGTGAAAAAGAACAGCTTCTTATGGAGCTACAGAGACATGAACAAGAGTGGCAAGAATATGAGATTCGAATACACTGCTCGAAAGACCGTGTGGAGAAGATGGAGCAGAAGCATCAGAAGATGATCTCTTCTGTTTCCAGTGTACTGCAGAAACCTGGAATTGACTTGAATCAATTGGCATTGCTAGAAACCACAGATAGAAAACGAAGGTTACCAAGAAATGGCTATCTTAGTGATGAAACTAACATTGAAGATACAACTGAGACCGAACAAATGTTACCCACAGAAAATTCACAGGACTCCTCCGTTTTGACAATAATCACAGAGCAGTTGGATCAGCTCGAGTCATCCATGGTATTTTGGGAAACCATTTCAAATGATATTTCTGACGCGACCATTCACATTCATTCAAGCTTGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCTGTCTATATCTTGTCCCCTACTAGATGTTGAAGTTCTGCCTAAGTCATCTGGAATTGACATGAACTCTGAGCCTGCTTCTGCTCCTGTTTCCGAGCCTGCTTCCGCATCAAAAGAACAACCTGCCGGCACAACCCCTGTGGTGGCTGGTGTTAATGATGTATTTTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCAGAAGCACAGGAAGTACAATCAGAAAGAAAGTATCATGATACTAGCAAGGGTGAAGGAAAACCTAGTGACCCAGGAAAATTTTGGTGGAACATGCGAAATACAAGTAATCTTCCAGAACAAATAGGTCATGTTAGTCAAGCAGAAAAAACATAG 1212 0.4183 MDEAQSSSNSLPPFLAKTYEMVDDPSTDPIVSWSASNRSFIVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFKKVDPEQWEFANDDFVRGQPHRMKNIHRRKPVHSHSLQNLQAQAPLTESERMSLQDEIERLNREKEQLLMELQRHEQEWQEYEIRIHCSKDRVEKMEQKHQKMISSVSSVLQKPGIDLNQLALLETTDRKRRLPRNGYLSDETNIEDTTETEQMLPTENSQDSSVLTIITEQLDQLESSMVFWETISNDISDATIHIHSSLDFDESTSCADSLSISCPLLDVEVLPKSSGIDMNSEPASAPVSEPASASKEQPAGTTPVVAGVNDVFWEQFLTENPGSSEAQEVQSERKYHDTSKGEGKPSDPGKFWWNMRNTSNLPEQIGHVSQAEKT* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5686 403 Coils Coil 111 159 - -
Amo13g5686 403 Gene3D - 6 104 IPR036388 -
Amo13g5686 403 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5686 403 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5686 403 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Amo13g5686 403 MobiDBLite consensus disorder prediction 304 331 - -
Amo13g5686 403 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5686 403 MobiDBLite consensus disorder prediction 347 403 - -
Amo13g5686 403 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 384 IPR027725 -
Amo13g5686 403 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5686 403 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5686 403 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g5686 403 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 384 - -
Amo13g5686 403 MobiDBLite consensus disorder prediction 306 328 - -
Amo13g5686 403 MobiDBLite consensus disorder prediction 381 403 - -
Amo13g5686 403 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5686 Amo-Chr13 158793356 158796343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5686 7 403 HSF AT4G18880 52.941 1.46e-120 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo13g5686 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5686 K09419 - gmx:100817602 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5686 13 158793356 158796343 Amo20g0214 20 2949990 2952260 PCT
Amo20g0214 20 2949990 2952260 Amo13g5686 13 158793356 158796343 PCT