Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5685 ATGGGTGAGTATTCATCAAGAAGCGGTGATGTTGCTATCTCTGTAACTAGTAAGGAGGAAGCAGGAGGAGGTGGGACCTGCAAAACAGGCAAATATTTTCTTCTGTTTCAGAAGATGGTGGCGGAGTTGGTGGGGACGTATTTCTTGATATTTACAGGGTGCGCAGCGATTGCGGTGAACAACGACTACGGGAAGCAAATAACGCTTCTTGGAATTGCAACTGTTTGGGGATTGGTTGTCATGGTCATCGTTTACTCCGTTGGTCATGTCTCTGGGGCCCATCTCAACCCTGCCGTCACTATTGCTTTTGCCTCCATCACAAAGTTTCCACTCACTCAGGTACCGGCTTATATAGCAGCTGAATTGCTTGGAGCGATCCTAGCAAGCGGAACAGTGAGACTAGTATTTAGTGGGAACCACGTTGAAGTTCAGTTCACAGGAACGTTGCCGAGTGGCTCAAACATCCAATCCTTCGTCATTGAATTCATTATCACTTTTTTCCTTATGTTTGTCATTTGCGCCGTTGCTACCGATAGCAGAGCGGTTGGTACCTTGGCTGGAGTTGCAATCGGGTCTACCATACTAATTAATGTGCTGATTGCAGCGCAAGTGTCAGGAGCATCAATGAACCCAGCAAGGAGTCTAGGACCTGCATTTGTGCACCATGAATACAGAGGAATATGGATATACTTGTTGTCACCCACCATTGGAGCTGTGGCGGGTGCATGGGTCTACAACATACTTAGGGAGAAGAAGGAGAAGCCCATCATTCACCTCACCAAGAATGCCTCTTTCAACTGA 801 0.4719 MGEYSSRSGDVAISVTSKEEAGGGGTCKTGKYFLLFQKMVAELVGTYFLIFTGCAAIAVNNDYGKQITLLGIATVWGLVVMVIVYSVGHVSGAHLNPAVTIAFASITKFPLTQVPAYIAAELLGAILASGTVRLVFSGNHVEVQFTGTLPSGSNIQSFVIEFIITFFLMFVICAVATDSRAVGTLAGVAIGSTILINVLIAAQVSGASMNPARSLGPAFVHHEYRGIWIYLLSPTIGAVAGAWVYNILREKKEKPIIHLTKNASFN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5685 266 Gene3D Glycerol uptake facilitator protein. 10 257 IPR023271 -
Amo13g5685 266 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Amo13g5685 266 CDD MIP 37 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5685 266 PANTHER AQUAPORIN NIP2-1 25 265 IPR034294 -
Amo13g5685 266 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5685 266 TIGRFAM MIP: MIP family channel proteins 41 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5685 266 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5685 266 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5685 266 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5685 266 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5685 266 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5685 266 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5685 266 SUPERFAMILY Aquaporin-like 33 253 IPR023271 -
Amo13g5685 266 PANTHER NODULIN-26 25 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5685 Amo-Chr13 158761739 158765808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5685 18 265 Major Intrinsic Protein MIP AT5G37820 54.000 2.01e-89 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5685 K09874 - gmx:547904 328.176