Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5684 ATGGCTGCGAATCCATCGTCAGAAACAAATGGAAAGCATGAAGTGGTTATGAATATAGAAAACAACAACAACAACACAAGCAATGGAAACTCATCATCATCATCACCCACCTCTCTCCCTGTCTCTTTGTTGCAGAAGTTTGTGGCAGAAGTGGTTGGCACATATTTCTTGATATTTGCAGGGTGTGCTGCGGTGGTTGTGAACAAGAACAACGACAATGTCGTTACACTTCCGGGGATTTCTATTGTTTGGGGATTGGCCGTTATGGCACTCGTGTATTCCATCGGTCACATCTCTGGTGCCCACTTCAACCCTGCTGTTACCATCGCTTTTGCTTCTACTAGAAGGTTCCCCTTCAAGCAGGTACCGGTCTATGTAGCAGCTCAGGTTGTTGGATCTACACTTGCAAGTGGAACCCTCAGATTATTATTCGATGGGAATCAAAACCAATTCGCAGGAACACTCCCAGCTGGCTCTGATCTACAAGCATTTGTCATCGAATTCATCATCACTTTTTATCTTATGTTCATCATATCCGGGGTTGCAACCGATAGCAGAGCGGTAGGTGAGTTGGCTGGGCTTGCAGTTGGCTCCACGGTGTTGCTGAATGTGATGTTTGCAGGGGCAATAACAGGGGCATCAATGAACCCAGCAAGGAGCATAGGGCCAGCAATAGTGCACAATCAATACAAAGGGATATGGATATACTTGGTAGCTCCAGTTTTGGGGGCTGTTGCTGGTACTTGGGTTTATAACGCTCTCAGGCACACCGCCAACCCCCCTTCTCGTGTTATTAAAAACACCGCTTCTTTCGTCAAAAGACAAGCTAGTCTTTAG 837 0.4636 MAANPSSETNGKHEVVMNIENNNNNTSNGNSSSSSPTSLPVSLLQKFVAEVVGTYFLIFAGCAAVVVNKNNDNVVTLPGISIVWGLAVMALVYSIGHISGAHFNPAVTIAFASTRRFPFKQVPVYVAAQVVGSTLASGTLRLLFDGNQNQFAGTLPAGSDLQAFVIEFIITFYLMFIISGVATDSRAVGELAGLAVGSTVLLNVMFAGAITGASMNPARSIGPAIVHNQYKGIWIYLVAPVLGAVAGTWVYNALRHTANPPSRVIKNTASFVKRQASL* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5684 278 CDD MIP 45 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5684 278 PANTHER AQUAPORIN NIP2-1 6 274 IPR034294 -
Amo13g5684 278 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 6 274 - -
Amo13g5684 278 Pfam Major intrinsic protein 41 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5684 278 SUPERFAMILY Aquaporin-like 40 258 IPR023271 -
Amo13g5684 278 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Amo13g5684 278 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5684 278 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5684 278 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5684 278 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5684 278 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5684 278 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g5684 278 Gene3D Glycerol uptake facilitator protein. 3 262 IPR023271 -
Amo13g5684 278 TIGRFAM MIP: MIP family channel proteins 49 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5684 Amo-Chr13 158749885 158751864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5684 12 277 Major Intrinsic Protein MIP AT5G37820 55.390 1.28e-99 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5684 K09874 - gmx:100798526 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5684 13 158749885 158751864 Amo03g3015 03 122870075 122871646 hybridization