Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5682 ATGGTTAAGCTTCCTTACCTCAGAGAAATTGATCTTTCTCTCAACTACCTAAATGGTACCATCCCAAAGGAATGGGCTTCAATGAAACTGACTACAATTGCTCTAATGGCTAATCGTTTATCGGGGGAGATTCCTAAGGAGTTGGGAAATATTGAAACTCTAACGAACCTGGACCTTGAAGCAAACCAATTATCTGGTCATGTACCCTCTCAACTTGGAAATCTGATTAACCTGCAAAGATTGGTTCTATCATCCAATAATTTGTCTGGGACCCTACCAGAGACATTTGCTCTATTACATAATTTGACAGAGTTTAGGATAAGTGATAATAGTTTCAGTGGAAAAATACCCAGCTTCATTCAGAACTGGAAGCTACTTCAAAGACTAGAGATGCATGCAAGTGGACTGGAGGGACCAATCCCATCAAATATATCTCTTTTGAGTAATTTAACTATTTTGAGGATTAGTGACATAGATGGTCCAAGTCAGGATTTTCCAGTTTTAAGCAGCATGAAAAAAATGAGAAGATTGGTTTTGAGAAACTGCAATATTACTGGAGAGATTCCTAGTGACATCTGGAAAATGGAGAATTTGAAAATGCTGGATGTGAGTTTTAATCAGTTGGTTGGCGAAATTCCAACTATCAAACCTGCAGCACCAATGACTTTTATCTTCCTAACTGGCAACAAACTAACTGGTAATGTACCTGACTCAATCTTGGCGGCGGGAGGCAATGTTGATCTTTCTTATAACAACCTTACGTGGCAAGGACCTGGGCAATCTGCTTGTCAAGATAACTTGAATTTAAACTTAAACTTGTTCCGGAGTTCTTTGGGGACCACAAAATTACAGGATGTTCTCCCATGTTCAAAGACCTTTAAGTGTCCTAGATACTCAAGCTGTTTGCATGTGAATAGTGGTGGAAAGGATGTAATGATGAAAGAAAATGGTGAAAATATCCTTTATATAGGGGATAGTGTGCCGGGTGGTACTGCTGAATATTATAATGACCTTAAAAAGCTTTGGGGGTTTAGCAGCACTGGTGACTTCATGGATGATGATGACATCCAAAATACACGTTACACCAAGACATTGTCACCTTCAAATTTGTCTGAATTATATGCAACGGCACGAGTGTCCCCTATTTCGCTCACCTATTTCCATTATTGCTTGGAAAATGGGAACTATACAGTAAAGCTCCACTTTGCAGAAATACAGTTTACTAATGATAGGACATGTAACAGTCTTGGGAAACGCTTATTCGATATCTATGTCCAGGATGGACTAGTTTTGAAGGATTTTAACATTGAAGAGAAAGCACATGGTGCTCAAAAACCATATATAGCAACAATTCCTAATGTCAGCGTAACAGACAATATTCTAGAGATCCGACTCTACTATGCTGGCAAGGGAACTGAAAGGGTTCCTTATCCTGCAGCTTATGGTCCCCTCATATCAGCTTTCTCTATTGTTTCTAATTCTAAACCTTGTTCAGTCCAAAAGAAAGCAGTGAATTATATAATAGTTGGAGTTGGATTTGGAATTACAGCTCTTTGCCTAGTCCTTATTATAGTAGGGATTCTTTGGTGGAAACACTTCTTCAAAGGAATAATTAGGACAGAAAAAGGTGTTGATGGACAATATAATCAGACAGGGACATATACATTAGAACAAATTAGAGCTGCCACAAATGATTTCTCTCCTGCTAACAAGATTGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAGTTATCCGATGGTACTTGGGTAGCGGTCAAACAGCTTTCTTCGAAGTCACGGCAGGGGAATCGTGAATTTTTAAATGAGATAGCCATGATATCTTGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATTTTGCATTGAAAACAATCAACTAATGCTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCATGCTTTATTCAGCTCAGAGAATCAGCTTAAACTTGATTGGTCAACAAGGCATAGAATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCTAGACTCAAGATTGTTCATCGAGATATCAAATCTACTAATGTGTTACTGGATGGGAACTTAAACCCTAAAATATCCGATTTTGGGTTGGCTAGGCTTGATGAAGAGGAAGAGACTCACATCAGCACCAGAGTGGCAGGAACAGTAGGATACATGGCACCGGAATATGCATTATGGGGTCACCTGTCTTACAAGGCTGATGTATACAGTTATGGAATTGTGGTCTTGGAAATTGTCAGTGGAAAGAACAATAAAAGTTACATGCCAAGTGATGATTGTCTTTGTCTTTTAGATAAGGCATTTCATCTTCAATCCACTGAAAACATAATGGCACTGGTTGATGAAAGGCTGGGATTAGAGGTGAACCCAACCGAAGCAGAAAACATGTTGAAAGTAGCTCTGCTGTGTACGAATGTATCGCCGTCTCTTAGGCCTACAATGTCAGAGGTTGTGAACATGCTTGAAGAAAAAACTAGCATCCCAGATGTTGTACCGGAATCTTTTTTTCGTGAAGATTTAAGGTTTAGAGCCATAAGAGACATCTATCAACACGGTGAAAATCAAAGTTTGTCTTCAAGCAAAACAGGCAGTTTAATAGGATATTTTGTACCTACTTCTTCCTCAGTCTCTGGCAATGACATGCATGAAATATGCTCAAAATCATAG 2712 0.3912 MVKLPYLREIDLSLNYLNGTIPKEWASMKLTTIALMANRLSGEIPKELGNIETLTNLDLEANQLSGHVPSQLGNLINLQRLVLSSNNLSGTLPETFALLHNLTEFRISDNSFSGKIPSFIQNWKLLQRLEMHASGLEGPIPSNISLLSNLTILRISDIDGPSQDFPVLSSMKKMRRLVLRNCNITGEIPSDIWKMENLKMLDVSFNQLVGEIPTIKPAAPMTFIFLTGNKLTGNVPDSILAAGGNVDLSYNNLTWQGPGQSACQDNLNLNLNLFRSSLGTTKLQDVLPCSKTFKCPRYSSCLHVNSGGKDVMMKENGENILYIGDSVPGGTAEYYNDLKKLWGFSSTGDFMDDDDIQNTRYTKTLSPSNLSELYATARVSPISLTYFHYCLENGNYTVKLHFAEIQFTNDRTCNSLGKRLFDIYVQDGLVLKDFNIEEKAHGAQKPYIATIPNVSVTDNILEIRLYYAGKGTERVPYPAAYGPLISAFSIVSNSKPCSVQKKAVNYIIVGVGFGITALCLVLIIVGILWWKHFFKGIIRTEKGVDGQYNQTGTYTLEQIRAATNDFSPANKIGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNREFLNEIAMISCLQHPNLVKLHGFCIENNQLMLVYEYMENNSLAHALFSSENQLKLDWSTRHRICIGIAKGLAFLHEESRLKIVHRDIKSTNVLLDGNLNPKISDFGLARLDEEEETHISTRVAGTVGYMAPEYALWGHLSYKADVYSYGIVVLEIVSGKNNKSYMPSDDCLCLLDKAFHLQSTENIMALVDERLGLEVNPTEAENMLKVALLCTNVSPSLRPTMSEVVNMLEEKTSIPDVVPESFFREDLRFRAIRDIYQHGENQSLSSSKTGSLIGYFVPTSSSVSGNDMHEICSKS* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5682 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Amo13g5682 903 Gene3D Ribonuclease Inhibitor 1 93 IPR032675 -
Amo13g5682 903 Gene3D Ribonuclease Inhibitor 94 159 IPR032675 -
Amo13g5682 903 Pfam Leucine rich repeat 53 111 IPR001611 GO:0005515
Amo13g5682 903 Gene3D Ribonuclease Inhibitor 160 278 IPR032675 -
Amo13g5682 903 Pfam Protein tyrosine and serine/threonine kinase 570 836 IPR001245 GO:0004672|GO:0006468
Amo13g5682 903 Pfam Malectin domain 301 488 IPR021720 -
Amo13g5682 903 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 877 - -
Amo13g5682 903 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 2 877 - -
Amo13g5682 903 Gene3D Phosphorylase Kinase; domain 1 538 641 - -
Amo13g5682 903 SMART serkin_6 566 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5682 903 CDD STKc_IRAK 572 838 - -
Amo13g5682 903 Gene3D - 299 495 - -
Amo13g5682 903 ProSiteProfiles Protein kinase domain profile. 566 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5682 903 SUPERFAMILY L domain-like 3 238 - -
Amo13g5682 903 Gene3D Transferase(Phosphotransferase) domain 1 642 845 - -
Amo13g5682 903 SUPERFAMILY Protein kinase-like (PK-like) 551 838 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5682 Amo-Chr13 158715406 158722463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5682 1 731 Receptor kinase-like Gene Family AT1G29750 60.870 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g5682 PK_Tyr_Ser-Thr 5.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5682 - - vra:106779815 1222.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5682 13 158715406 158722463 Amo20g0206 20 2878281 2883081 PCT
Amo20g0206 20 2878281 2883081 Amo13g5682 13 158715406 158722463 PCT