Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5677 ATGGATTTCCCAAACCATCATCATCAGGAATCGATGTCAGACAGTTGTTCTCAACAGAAAAAGAACAACAACATGGGAAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACAACAAACAGGCAAGTAACATTCTGCAAGAGAAGGAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCAAGCCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCATCTATTGAGAGGTACAAGAAAGCCAGTTCAGATTCTTCTAATGGTGGATCCACTTCTGAGATTAATGCTCAGCATTACCAGCAAGAATCTGCAAAACTGCGTGTGCAAATCAGTAACCTTCAGAACCACAACAGGCAAATCTTAGGTGAGGCTTTGAGCAATATGGCTATCAAGGATCTCAAAAACCTTGAGACCAAATTGGAAAAAGGGATTAGCAAAATTCGTTCCAAGAAGAACGAGCTGCTGTTTGCAGAGATAGATTACATGCAGAAGAGGGAGGTAGACTTGCATAACAACAACCAGTTTCTTAGAGCTAAGATAGCAGAAAGTGAGAGGAACCAACATAGCAATAACAACAACAATAATGTGTTGAGTGGAGGAGGAACAAACTATAACAATAATGAATCTCATCACAATGAGCAGCATCAATTTGAGTCTCGTGGCTACTTCCAAGTCACTGCATTACAACCCAATAACAATGAAAACCATTATGCTGCTACTGCTGCTAGGCAAGATCACATGTCCCTTCAATTAGTCTAA 804 0.4042 MDFPNHHHQESMSDSCSQQKKNNNMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKASIERYKKASSDSSNGGSTSEINAQHYQQESAKLRVQISNLQNHNRQILGEALSNMAIKDLKNLETKLEKGISKIRSKKNELLFAEIDYMQKREVDLHNNNQFLRAKIAESERNQHSNNNNNNVLSGGGTNYNNNESHHNEQHQFESRGYFQVTALQPNNNENHYAATAARQDHMSLQLV* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5677 267 MobiDBLite consensus disorder prediction 10 25 - -
Amo13g5677 267 Gene3D - 37 133 IPR036879 GO:0003677|GO:0046983
Amo13g5677 267 ProSiteProfiles K-box domain profile. 111 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g5677 267 MobiDBLite consensus disorder prediction 199 231 - -
Amo13g5677 267 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Amo13g5677 267 CDD MADS_MEF2_like 26 102 IPR033896 GO:0000977|GO:0045944
Amo13g5677 267 PANTHER AGAMOUSB 19 255 - -
Amo13g5677 267 Coils Coil 111 131 - -
Amo13g5677 267 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Amo13g5677 267 MobiDBLite consensus disorder prediction 199 225 - -
Amo13g5677 267 PANTHER MADS BOX PROTEIN 19 255 - -
Amo13g5677 267 Coils Coil 148 168 - -
Amo13g5677 267 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Amo13g5677 267 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Amo13g5677 267 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Amo13g5677 267 MobiDBLite consensus disorder prediction 1 31 - -
Amo13g5677 267 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Amo13g5677 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
Amo13g5677 267 Pfam K-box region 107 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g5677 267 SUPERFAMILY SRF-like 26 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5677 Amo-Chr13 158674405 158678568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5677 25 267 MADS-box Gene Family AT3G58780 61.317 2.62e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo13g5677 K-box 7.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5677 K09264 - gmx:732595 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5677 13 158674405 158678568 Amo20g0200 20 2808592 2816049 PCT
Amo20g0200 20 2808592 2816049 Amo13g5677 13 158674405 158678568 PCT