Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5673 ATGGGAATACAGGGTTTGTTGCCGCAGTTGAAATCGATAATGGCTCCGATTCACATAAAGGAGCTTGAGGGGTGCTGTGTTGCGGTGGACACATATTCATGGCTCCACAAAGGCGCACTCTCTTGCAGCACCCACCTCTGCAAAAACATTCCCACAACCAGGCACATTGAGTATTGCATGCATAGAGTGAATTTGCTGCGCCATTTTGGTATTAACCCCATTCTTGTATTTGACGGTGGACTTCTACCCATGAAGGCCGAACAAGAGAATAAGCGTGCCAGGGTAAGAAAGGAAAATTTTGCACGAGCTGTTGAACATGAGTCAAATGGAAATAACACTGCTGCTTTTGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTCATTGCGCGCGACCTAATTCAGGTATTGAGGCAGGAGAATGTGCAATATATTGTAGCTCCTTATGAGGCTGATGCTCAGATGGCTTTCTTGGCCATTAGTGGACAGGTTGATGCAGTTATAACTGAAGATTCTGATCTTATACCATTTGGATGCCCAAGGATTATCTTCAAAATGGACAAGTTTGGACAAGGAGTTGAGTTTCGGTACTCCATGTTACAGAAGAATAAGGAGCTTTGTTTTGAAGGATTTGACAGGCAAATGCTTCTCGAAATGTGTATCTTGAGTGGCTGCGACTATCTTCAGTCCTTGCCAGGTATGGGCCTGAAAAGAGCTCATGCAATCATTAAAAGATTTAAAAGTTATGACAAGGTTCTTAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTATACGAAGAGTCGTTCAGGAAGGCTATATTGACTTTCCACTTTCAACGGGTGTATGATCCAATTAATGAAAACGTTATTCATTTATCGAATATACCTGATGATATTGGTGACGAGTTAGATTTTTTAGGCCCATATCCTTCAATTTTAAGGGATATAGCACAAGGCATAGCAAAAGGAGATCTCGATCCATTTACCAAAATGCCATTTGAGGGGGCGATTCTTAATCCCGGGTTAGCAACTGCTGGAACTTCACAATTTAAAACTATTCATTCTGAAAGTGTGAAGAAAAAGATTGATCTGCCTGTGCAAAAGAATCTCTTGACTAAGAATTTCAGAGCACCTCGGGTACAACCCACCCCTGCTAATCATGGTACATTTGATTCCTCTTTTGTCAATTCTATGGATCACGAAACTTCAGAGGCTACAGCTAGCAAGACAAAGAACTCCGCTGCCACTTTAGTTGACTCCGAGAATTCGGACCCTGACAGTAGCCCTCCTCCTGCAAATGACTTTGTAATTTCTATGGTGGGTGAAAGAAACAGAAGTCCTGAAAATACAGCACTACGACAAGTTAGGCAGCCAATTCATAAACCCTGTGTGGGGTTGCATAAGGAGCATGAGCATACACTTGTTCAAGACACGATTGAGTCAAAAACCAAGGAGGTTACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAACAAAGTAGAAAAGAATGATTATGATGATAAACAAGCTCACCCGTCTGAAGCTGGCACTTTAATTGGTGAGAAAAAAAATTCCATATCCGACGGTGATTCAAGTGGCAATCTTGTGAAGAATAAAGACTTGAAGAGGAAAACCTCCCCTAATGACAACATTCAAAATGAAAATTTGCAACCGAGGTCTATTTGTCCTACATCACCCCCTCATGATAATGGTTACTCTGATCACAATGTTGATACACCAGATGGAAAAAATAATAACGGTGAAGAGAAATTCGGTGTAAACATTTCCCATCTAGGCCATTATTCAGAAATAGCTGAGAAATCTGTAGAAAGATTTGCCTCCGTGATCTCATCCTTCAGATGCTCTTCTGGCTCTCGTGCCAGTGGTCTCCGTGCTCCTCTAAGAGATGTTCGGAACAGTTGCAATAACAGGCCAACAAATGTGGATTTCGGACAATATGCATACGTGTCAAAACAAAGGAAGACCAGCAGAACTAAACTTGATTGA 2019 0.4175 MGIQGLLPQLKSIMAPIHIKELEGCCVAVDTYSWLHKGALSCSTHLCKNIPTTRHIEYCMHRVNLLRHFGINPILVFDGGLLPMKAEQENKRARVRKENFARAVEHESNGNNTAAFECYQKAVDISPLIARDLIQVLRQENVQYIVAPYEADAQMAFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVEFRYSMLQKNKELCFEGFDRQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKRFKSYDKVLKHLRYSGVSVPPLYEESFRKAILTFHFQRVYDPINENVIHLSNIPDDIGDELDFLGPYPSILRDIAQGIAKGDLDPFTKMPFEGAILNPGLATAGTSQFKTIHSESVKKKIDLPVQKNLLTKNFRAPRVQPTPANHGTFDSSFVNSMDHETSEATASKTKNSAATLVDSENSDPDSSPPPANDFVISMVGERNRSPENTALRQVRQPIHKPCVGLHKEHEHTLVQDTIESKTKEVTRKVIVRSAYFQHNKVEKNDYDDKQAHPSEAGTLIGEKKNSISDGDSSGNLVKNKDLKRKTSPNDNIQNENLQPRSICPTSPPHDNGYSDHNVDTPDGKNNNGEEKFGVNISHLGHYSEIAEKSVERFASVISSFRCSSGSRASGLRAPLRDVRNSCNNRPTNVDFGQYAYVSKQRKTSRTKLD* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5673 672 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 337 IPR036279 -
Amo13g5673 672 MobiDBLite consensus disorder prediction 507 595 - -
Amo13g5673 672 Gene3D - 1 207 - -
Amo13g5673 672 Gene3D - 209 281 - -
Amo13g5673 672 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Amo13g5673 672 SMART xpgineu 138 209 IPR006086 GO:0004518
Amo13g5673 672 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Amo13g5673 672 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 647 IPR006084 -
Amo13g5673 672 MobiDBLite consensus disorder prediction 387 431 - -
Amo13g5673 672 MobiDBLite consensus disorder prediction 380 438 - -
Amo13g5673 672 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Amo13g5673 672 SMART xpgn3 1 99 IPR006085 GO:0004518
Amo13g5673 672 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Amo13g5673 672 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Amo13g5673 672 MobiDBLite consensus disorder prediction 552 584 - -
Amo13g5673 672 PANTHER EXONUCLEASE 1 1 647 IPR032641 GO:0006281|GO:0035312
Amo13g5673 672 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Amo13g5673 672 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Amo13g5673 672 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Amo13g5673 672 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Amo13g5673 672 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Amo13g5673 672 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5673 Amo-Chr13 158646635 158650441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5673 1 267 Core DNA Replication Machinery Family AT5G26680 28.114 2.72e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5673 K10746 - gmx:100798062 869.766