Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5672 ATGCCTCGTAAGGTAAACTACGGACTCGATTACGACGATGATTATGGCGATGAATATGACGACTATGATGATTATTATGAAGACTATGGAGAAGTACCTGAAACAAAGCAAGAGACACCGAGACCTCCTGGGGTTTGGCGATGCACCATTTGCACGTATGACAATGATGAGAGTATGACATCTTGTGATATTTGTGGTGTTATACGCCGTGACTTTGTAAACACTGGTACATCCAATATTAAACAAACAGCTCCTTTCAAGTTTGATGTTCCATCCCCTGATGATGTAGTTTATACTGGTCTACGTTCTTCCAAAACAGCTTCAAAAGACAAAATTATGAATAATGACCATTCTGTTCAATCAAATGTTGAAAGTTTAGAGAATTTAACATCACTAATGCAAAAGGGTAGGCAGGATAGGTCAGCTGAGAGCAAACTTTCAAAGAAGCCAGCAGTTCATCTGGAAACTAGTGATAAAACTTCAAATGTGAATAAGAAAAATGGTACACTTGATATTCGCTCAAGCAAAGGAAAGGCTGGTAGTTCATCTGCAATGCCTGAAGTCAAAGGTATTGATGCAATTAATTTCTCTTCTATCAAAGAGGGAAAATCCGAAAGTCTTTCCAGCAGTTTCAACAAAATAGCTGTGGACGTAAGATCTGGGATTTCAGATAATACTAACTCTAAGGGATCTCATCCACAAGTTTCTTACAAACCTGAAAAATGGATGCTACCTCAACAAGCTGAAGATACGTTGACTCAGCTGAATCTTGCAATTGTTGGACATGTTGATTCTGGGAAATCAACACTCTCAGGTAGGTTACTTCACCTATTGGGACGGATTTCCCAAAAACAAATGCACAAATTTGAAAAGGAGGCCAAAATACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGGGAAAGGGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACTAAGAAATATCATGTTGTGGTTCTTGACTCCCCCGGGCATAAAGATTTTGTGCCAAACATGATTTCTGGAGCAACACAGGCTGATGCTGCAATTCTTGTCATAGATGCTTCACGTGGTTCATTTGAAGCTGGTATGGATGGTGGCAAGGGACAAACTAGGGAGCATGCACAACTTATTAGAAGCTTTGGTGTTGACCAGGTTATAGTTGCAGTGAATAAGATGGATACAGTAGCGTATGCCAAAGATCGATTTGATTATATAAGACAGCAGTTGGGAATGTTTCTGCGCACTTGTGGTTTCAAAGATTCTTGTGTGTCATGGATTCCTATGAGTGCAATGGAAAATCAAAATTTGGTCGCATCCCCTTCTGACGCTAGTTTTAAAAGCTGGTATAACGGACCATATTTGTTAGATGCAATCGACTCACTTCCACCACCTGCTAGAGAATACTCGAAACCGCTGCTAATGCCAATATGTGATGTCATCAAATCACCCACACTTGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTGCAGCCGTCATGGGAACAGTACGCTCAATGGAGCGTGACTCTAATGCCTGCAGTGTTGCAAGGGCCGGAGATAATGTATCTGTAACATTGCAAGGTGTTGATGGAAGTAATGTGATTGCAGGAGGTGTGTTATGCCATCCTGACTTTCCTGTTGCAGTTTCTAATCATTTGGAGTTGAAAGTGCTTGTTTTGGATGGTGCAAGCCCTGTATTGATGGGTTCTCAGTTGGAGTTTCATATACACCATGCAAAGGAGCCTGCAAGGGTTTCAAGAATATCATCAATACTTGATCCAAAGACTGGTAAGGTGACCAAAAAGTCACCTCGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTAACTTTGCAGGAGCCAGTTTGTGTAGTAGATGTCTCAATTTGTAAAGCTCTTGGCAGGGTATCGCTAAGATCTTCAGGTAGAACAATCGCTGTGGGACTTGTGACGAGAATAATTGAAGAGCTACACTAG 2052 0.4157 MPRKVNYGLDYDDDYGDEYDDYDDYYEDYGEVPETKQETPRPPGVWRCTICTYDNDESMTSCDICGVIRRDFVNTGTSNIKQTAPFKFDVPSPDDVVYTGLRSSKTASKDKIMNNDHSVQSNVESLENLTSLMQKGRQDRSAESKLSKKPAVHLETSDKTSNVNKKNGTLDIRSSKGKAGSSSAMPEVKGIDAINFSSIKEGKSESLSSSFNKIAVDVRSGISDNTNSKGSHPQVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAKIQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASRGSFEAGMDGGKGQTREHAQLIRSFGVDQVIVAVNKMDTVAYAKDRFDYIRQQLGMFLRTCGFKDSCVSWIPMSAMENQNLVASPSDASFKSWYNGPYLLDAIDSLPPPAREYSKPLLMPICDVIKSPTLGQVSACGKLEAGALRSGSKVLVMPAAVMGTVRSMERDSNACSVARAGDNVSVTLQGVDGSNVIAGGVLCHPDFPVAVSNHLELKVLVLDGASPVLMGSQLEFHIHHAKEPARVSRISSILDPKTGKVTKKSPRCLTAKQSAVIEVTLQEPVCVVDVSICKALGRVSLRSSGRTIAVGLVTRIIEELH* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5672 683 MobiDBLite consensus disorder prediction 138 155 - -
Amo13g5672 683 Pfam Elongation factor Tu GTP binding domain 255 471 IPR000795 GO:0003924|GO:0005525
Amo13g5672 683 Gene3D Translation factors 480 569 - -
Amo13g5672 683 PANTHER TRANSLATION FACTOR 127 681 - -
Amo13g5672 683 SUPERFAMILY Translation proteins 474 569 IPR009000 -
Amo13g5672 683 ProSitePatterns Zinc finger RanBP2-type signature. 46 65 IPR001876 -
Amo13g5672 683 ProSiteProfiles Zinc finger RanBP2 type profile. 42 71 IPR001876 -
Amo13g5672 683 PANTHER OS04G0595300 PROTEIN 127 681 - -
Amo13g5672 683 MobiDBLite consensus disorder prediction 134 184 - -
Amo13g5672 683 SUPERFAMILY Ran binding protein zinc finger-like 43 69 IPR036443 -
Amo13g5672 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 497 IPR027417 -
Amo13g5672 683 MobiDBLite consensus disorder prediction 156 181 - -
Amo13g5672 683 Gene3D Translation factors 574 683 - -
Amo13g5672 683 SMART zf_4 44 68 IPR001876 -
Amo13g5672 683 CDD EF1_alpha 256 475 - -
Amo13g5672 683 Pfam Elongation factor Tu C-terminal domain 577 678 IPR004160 -
Amo13g5672 683 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 252 477 IPR000795 GO:0003924|GO:0005525
Amo13g5672 683 PRINTS GTP-binding elongation factor signature 256 269 IPR000795 GO:0003924|GO:0005525
Amo13g5672 683 PRINTS GTP-binding elongation factor signature 315 323 IPR000795 GO:0003924|GO:0005525
Amo13g5672 683 PRINTS GTP-binding elongation factor signature 335 345 IPR000795 GO:0003924|GO:0005525
Amo13g5672 683 PRINTS GTP-binding elongation factor signature 351 362 IPR000795 GO:0003924|GO:0005525
Amo13g5672 683 PRINTS GTP-binding elongation factor signature 396 405 IPR000795 GO:0003924|GO:0005525
Amo13g5672 683 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 575 679 IPR009001 -
Amo13g5672 683 CDD HBS1_C_III 570 678 - -
Amo13g5672 683 Gene3D - 243 474 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5672 Amo-Chr13 158639683 158645609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5672 44 681 Eukaryotic Initiation Factors Gene Family AT5G10630 61.719 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5672 K14416 - gmx:100798594 1040.8