LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g5663	ATGAAAGGGTGTTGCAAACTTGCAATGAAGGAGTCTGTAGACCATTCTTATCCTGTAGGTCCAACCAAGATTCCATCAGAAAATACACCTAAAGAAGTGCAACAAGGTGCATGGGAGGATTTATCTAGATCTGATCTATACCATGTTTCATCTCATACTGGCTTCTTTTCTAGGTCATTGCCTGTTCCGTTACATGAAAAGTTGAACTTAAGCAGTGCTGATGGCTTTAAAAAGTCCCATCAAGATGTAGATGGGAATGGTTTACTTGAGGATGCTGATACTTGTGTGATAGGAACCATGCTTCCAGATGATGAGGAGGACCTTTTAGCTGATTTTGACCTAAGTGGTTTGCCAAACTCTCTTGAGGATTTGGAGGAGTATGATGTTTTTGGTAGTGGTGGAGGTATGGAACTGGAAGCTGATCCTCAGGAAAGTCTTAATGTGGGTGTGTCAAAATTAAGCTTCTCTGATGGTCATGCTGCCAATGGTTTGCCCTATAATTCTTTTCTTAATGGTGTGGGGATTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGGACATTATTTGTTCGAAATATTAATAATAATGTGGAGGATTCAGAGTTGAGAGCTCTTTTCGAGCAATATGGTCACATTAGGACTCTATATACTGCATGTAAACATCGTGGGTTTGTTATGGTATCCTATTATGACATCCGTGCTGCTCGAACAGCCATGCACGCATTACAAAACAAACCTTTACGACGCCGGAAACTTGACATTCACTTCTCAATACCAAAGGATAATCCATCTGACAAGGACATCAACCAAGGAACCTTGGTAGTTTTCAATTTGGACCCATCTGTTTCGAATGAGGACCTCCGTACAATATTTGGGGCATATGGAGAGGTCAAAGAGATACGGGAAACGTCTCACAAAGGCCATCACAAGTTTATTGAATTTTATGATGTGAGGGCTGCAGAAGCAGCACTAAAATCATTAAACAGGAGTAACATAGCTGGGAGGCGAATAAAGGTGGAGCTTAGCCGGCCTGGCAGAACTCGTCGAAATTTAGTGCTTCAAACAAATCAAGAGCTTGATCATGATGAAAAGCTAAGTTTCCGACATCAGATGGGTTCACCTGTGGCCAATTCTCCACCCGGTTACTGGTTGCGGTTCAACAGCACTGTTGAAAATAACTCATTTCAAACTATAAGCGATTCTCCTGGTTCTGGGATCATGAGTCCATCAATAGGAAACCATTTAGCTGGATTAGCTTCTGTTTTGCACCCTCCACTATCCAATGCCATGAAGGGTGTAGCTATTGGGAAAGATTTAGCAGGGAGTCAGCATGCAGAGCATATATTTGCTAGTAGTAATTCATCGCATGGAGAGACATTTCAATCTCATTCTCTTCCAGAACCAAAATTCATCCCATATAGTGGAGCTTTGTCTTCTTTTGGTTCATCTCCTTCAAATGGATCCTCGGTGGAAACCTTGTCAGGGTCACAATTTTTATGGGGAAGTCCGAACTTGTACTCACAGGACATCAAACCTTCAGCTTGGCCAACACCATCTGTGAGGCATTCATTTACAGCAAATGGAAATAGCCATGCCTTCCAAAACCCTGCTCAAGAGAGTTCTTTTATTGGTTTGTCCCACAATCGTCACCATAATCATGTTGGCTCTGCTCCATCAGGTTTTCCTTTTGAGAGAAACTTTGGAGTCCTTTCGAAGTCACCTGAAACGTCGTTCGTGAACCATGTTGGTTATGGAGGCATAGGTCTGAGTCACAGTAAGGGGAATTACATGGTTAATATGGGTGAATCTGTTAATGCCGGGATCACTATACCAAGAAATATGTCTGAACATGGTTCGCCAAACATTGGAATGAGATCATCTCCCAGACTTAGTCTTGTGTTTTCAGGTAATGGTCCATACCCAGGATTGCCACCTACTGCTACTACTACTACTACTACTACTTCAGTGTTTGGTTTCGTGGACCCTGGGCGGAATAGGCGCATAGAGAACAATGGGGGCCAAGCTGATAGCAGCAAGAAGCAATTTCATCTTGACTTGGATAGGATTAAAAACAGTGAAGACAGAAGGACTACCTTAATGATAAAGAACATCCCAAATAAATACACCTCAAAAATGTTATTAGCTGCTATTGATGAAAAGCACAAGGGTACCTATGATTTTTTCTATCTACCAATCGACTTTAAGAATAAATGCAATGTGGGATACGCATTTATCAACATGCTGTCGGCATCACACATTATTCCATTCTATGAGACATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCCCTGGCATATGCACGAATCCAAGGAAAGGCTGCATTGGTGAACCATTTCCAGAATTCAAGTCTGATGAACGAAGATGAGCGGTGCCGCCCAGTCGTCTTCCATTCACAGGATCCTGAAGGTGGTGATAAGATCATACAAGATCATACAAGTGATTCAACCTCGGAGACAAAATAA	2505	0.4204	MKGCCKLAMKESVDHSYPVGPTKIPSENTPKEVQQGAWEDLSRSDLYHVSSHTGFFSRSLPVPLHEKLNLSSADGFKKSHQDVDGNGLLEDADTCVIGTMLPDDEEDLLADFDLSGLPNSLEDLEEYDVFGSGGGMELEADPQESLNVGVSKLSFSDGHAANGLPYNSFLNGVGIVAGEHPYGEHPSRTLFVRNINNNVEDSELRALFEQYGHIRTLYTACKHRGFVMVSYYDIRAARTAMHALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRTIFGAYGEVKEIRETSHKGHHKFIEFYDVRAAEAALKSLNRSNIAGRRIKVELSRPGRTRRNLVLQTNQELDHDEKLSFRHQMGSPVANSPPGYWLRFNSTVENNSFQTISDSPGSGIMSPSIGNHLAGLASVLHPPLSNAMKGVAIGKDLAGSQHAEHIFASSNSSHGETFQSHSLPEPKFIPYSGALSSFGSSPSNGSSVETLSGSQFLWGSPNLYSQDIKPSAWPTPSVRHSFTANGNSHAFQNPAQESSFIGLSHNRHHNHVGSAPSGFPFERNFGVLSKSPETSFVNHVGYGGIGLSHSKGNYMVNMGESVNAGITIPRNMSEHGSPNIGMRSSPRLSLVFSGNGPYPGLPPTATTTTTTTSVFGFVDPGRNRRIENNGGQADSSKKQFHLDLDRIKNSEDRRTTLMIKNIPNKYTSKMLLAAIDEKHKGTYDFFYLPIDFKNKCNVGYAFINMLSASHIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVNHFQNSSLMNEDERCRPVVFHSQDPEGGDKIIQDHTSDSTSETK*	835

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g5663	834	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	273	346	IPR000504	GO:0003723
	Amo13g5663	834	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	188	261	IPR000504	GO:0003723
	Amo13g5663	834	SUPERFAMILY	RNA-binding domain, RBD	185	349	IPR035979	GO:0003676
	Amo13g5663	834	CDD	RRM3_MEI2_like	701	786	IPR034454	-
	Amo13g5663	834	Gene3D	-	177	271	IPR012677	-
	Amo13g5663	834	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	190	254	IPR000504	GO:0003723
	Amo13g5663	834	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	275	340	IPR000504	GO:0003723
	Amo13g5663	834	Pfam	RNA recognition motif 2	698	794	IPR007201	-
	Amo13g5663	834	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	13	820	-	-
	Amo13g5663	834	CDD	RRM1_MEI2_like	187	263	IPR034453	-
	Amo13g5663	834	MobiDBLite	consensus disorder prediction	817	834	-	-
	Amo13g5663	834	SMART	rrm1_1	189	257	IPR000504	GO:0003723
	Amo13g5663	834	SMART	rrm1_1	700	776	IPR000504	GO:0003723
	Amo13g5663	834	SMART	rrm1_1	274	342	IPR000504	GO:0003723
	Amo13g5663	834	Gene3D	-	272	370	IPR012677	-
	Amo13g5663	834	MobiDBLite	consensus disorder prediction	809	834	-	-
	Amo13g5663	834	PANTHER	PROTEIN MEI2-LIKE 2	13	820	-	-
	Amo13g5663	834	SUPERFAMILY	RNA-binding domain, RBD	700	785	IPR035979	GO:0003676
	Amo13g5663	834	CDD	RRM2_MEI2_like	272	342	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g5663	Amo-Chr13	158581715	158588205	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g5663	185	330	Eukaryotic Initiation Factors Gene Family	AT1G71770	28.846	2.70e-10	62.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g5663	-		-	gmx:100800877	1167.91