Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5642 ATGAAGAAGAGACAGGTGGCGGTGAAGACTTCGTCGACGGTGATAAGGAACGTAAGGTACGGGGAGTGCCAGAAGAATCACGCGGCCAATATCGGAGGGTACGCGGTGGATGGGTGCAGGGAGTTCATGGCCAGTGCAGGGGAAGGAACCAACGGCGCTCTCACGTGTGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCAGGGAAGTGCAAACTGAGGTTGTCTGA 228 0.5789 MKKRQVAVKTSSTVIRNVRYGECQKNHAANIGGYAVDGCREFMASAGEGTNGALTCAACGCHRNFHRREVQTEVV* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5642 75 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Amo13g5642 75 Pfam ZF-HD protein dimerisation region 17 70 IPR006456 -
Amo13g5642 75 PANTHER MINI ZINC FINGER PROTEIN 3 2 75 - -
Amo13g5642 75 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 75 - -
Amo13g5642 75 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5642 Amo-Chr13 158277768 158280520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5642 1 75 Zinc finger-homeobox gene family AT1G18835 72.840 3.84e-34 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo13g5642 ZF-HD_dimer 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5642 - - gmx:100785967 140.969