Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5637 ATGGATGTTGTAGAGCGTTGTGATGAAGAAAGTGATAATGCAGAGAATGAATACGTGGATAATGCATGGAAGGAAATGAGCAAGGATAAGGGTAAGGATAAGAAGGGCTTAACAAGGAAGAGCATTTCTGAGTGCTTCTACATGCCCATAGCAGAAGCGGCGAGACACCTCAAGGTGGGTCTCATACATCTCAAGAGAAGGTGGAGGGACTTAGGCATTCAGAGGTGGCCTCACAGGAAGCTCATGAGTCTTCAAACCCTAATCAACAATCTGCAGCAGCAGCAGGAGGAGGGAGTTGATGAGGATGAGAGCAGCAGAATAAGGAGTGCCATTCACATTTTGGAGAGAGAGAAGAGCTTGTTGGAGGAAATTCCCCACTTGCAACTGGAGACCACACCAAAAGGCTAA 408 0.4681 MDVVERCDEESDNAENEYVDNAWKEMSKDKGKDKKGLTRKSISECFYMPIAEAARHLKVGLIHLKRRWRDLGIQRWPHRKLMSLQTLINNLQQQQEEGVDEDESSRIRSAIHILEREKSLLEEIPHLQLETTPKG* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5637 135 ProSiteProfiles RWP-RK domain profile. 19 104 IPR003035 -
Amo13g5637 135 PANTHER PROTEIN RKD1-RELATED 10 134 - -
Amo13g5637 135 Pfam RWP-RK domain 37 84 IPR003035 -
Amo13g5637 135 PANTHER PROTEIN RKD4 10 134 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5637 Amo-Chr13 158241127 158241534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5637 35 130 AtRKD Transcription Factor Family AT1G18790 50.000 7.05e-27 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo13g5637 RWP-RK 2.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5637 - - adu:110274768 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5637 13 158241127 158241534 Amo13g5637 13 158241127 158241534 ECH