Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5617 ATGCAGGCTATCTGGTTAGAATGCATGCAAGAAGCAGGTGAAATTATATTTGTTCCCAGTGGATGGTACCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAACTGGTTCAATGCGTATAACCTTTCATGGGTGTGGAATTTACTTTTGAGGGACTACAATGAGGCCAAAGAATACATAGAAGACATCAAGGATGTATGTGAGGATTTCGAAGGTCTTTGCCAGCGCAATCTTGCTGCTAACACGGGGATGAACTTTTATGACTTCTTTACTTTCATATCACGCTTCACCTTGGCCAACATTGTCTTGCTTTGTTATATAAATGGAAGACATGGAAATATCACTCAAATCTCATCAACAATAGCTCAGCATTTATTGATGAATCTTGGATCCATAAGGAAGGTTGCATCGGAGATGAAAGACAGGCATGCTCTAAAAGGGAATCAGGATCGCGCTGTGGACATTATAGAAACACTTGAAGATCCTAGGTTTTGCAAATTGTGCATGGATATAGGAAGAACATATGCAATGATACATGAAGAGTCTCATTTGTCCTTTGATTTCGAGAGCGCTTCGGCTGGTGAAATAGCGGATCTCACTGTTTTGAAAGCATACACTTCATCTGAGTTCTACACACCTGAAGATCTTGTTGAATTTATAGACAATGCTGTTGCAGAACATGGTGACTGTTACATCAACTCATCTGTAATATGA 723 0.3928 MQAIWLECMQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDVCEDFEGLCQRNLAANTGMNFYDFFTFISRFTLANIVLLCYINGRHGNITQISSTIAQHLLMNLGSIRKVASEMKDRHALKGNQDRAVDIIETLEDPRFCKLCMDIGRTYAMIHEESHLSFDFESASAGEIADLTVLKAYTSSEFYTPEDLVEFIDNAVAEHGDCYINSSVI* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5617 240 Pfam JmjC domain, hydroxylase 7 39 IPR003347 -
Amo13g5617 240 Gene3D Cupin 1 41 - -
Amo13g5617 240 SUPERFAMILY Clavaminate synthase-like 4 68 - -
Amo13g5617 240 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 229 - -
Amo13g5617 240 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 6 229 - -
Amo13g5617 240 ProSiteProfiles JmjC domain profile. 1 56 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5617 Amo-Chr13 158028524 158030586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5617 6 48 Glycosyltransferase AT1G78280 44.186 1.29e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo13g5617 JmjC 1.5e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5617 - - aip:107623961 484.952