Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5589 ATGCGCAACCGTTTTTCTGTGTCCCTATCTCCTCTAACTAGAATCTCCTTCTCTCATCACTCTAAAAGATCAAAGATGTGTGGAGGTTCTATCATCTCAGACTTCGCTGGGGTCAAGCGTGGCCGGAAATTGGTCTCTCAGGACTCATGGTATGATGAGCTGGACCCTTTCTTCGACTTCCTTGGTTTTGACACCGCCGTAGCTGCCGCCACCAACCCCAACAACAAGGTTCAGTCACCACTTCCCGAGATCCCAGGAGATAACAACAACAAAGTGGCAGCATGTGACGAGGTACTAGGAATGGAAAAAATGGTGGTTGGTGGTGCAGAAGATAAGAAGCAGCCCGGGAAGAAACTTAAGAACGTGTACAGGGGAATCAGGCGCAGGCCCTGGGGAAAGTGGGCCGCGGAGATAAGGGACCCACGCAAAGGGGCCCGTGTCTGGCTCGGCACTTTCAACACTGCCGAGGAGGCTGCTAGGGCCTACGACGTCGCTGCTATACACATCCGAGGAAACAAAGCCAAGCTCAATTTTCCGAATACTATCAAGGACAACGGCGTCGAAGTCCTTCCATTGGCTAAGAAACTATGCCTTAGCGATCAGACCCAATTTCCCATGTTAACACCTATCTCTGCCACGTTTGACAGTGATGATGGAAGCATGGAGGGATGGGAATCCAACCTGACACAGCAGATGTCGGGTCTTGAATGGCTCCTTGGATTGGAGAATGAACAACCATCCCAAATGGGGGGTGATGTCTTTTCGAACAACATTAACAACAACAATGATAGCACCAAAAACGATAACAACATGGACCTGTGGATGCTAGCTGACGTGGTTATGCCCAACCGTTATGCCCAAACATTTTGCGGACAATAA 879 0.4983 MRNRFSVSLSPLTRISFSHHSKRSKMCGGSIISDFAGVKRGRKLVSQDSWYDELDPFFDFLGFDTAVAAATNPNNKVQSPLPEIPGDNNNKVAACDEVLGMEKMVVGGAEDKKQPGKKLKNVYRGIRRRPWGKWAAEIRDPRKGARVWLGTFNTAEEAARAYDVAAIHIRGNKAKLNFPNTIKDNGVEVLPLAKKLCLSDQTQFPMLTPISATFDSDDGSMEGWESNLTQQMSGLEWLLGLENEQPSQMGGDVFSNNINNNNDSTKNDNNMDLWMLADVVMPNRYAQTFCGQ* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5589 292 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Amo13g5589 292 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Amo13g5589 292 PANTHER DNA-BINDING DOMAIN 26 264 IPR044808 GO:0003700|GO:0009873
Amo13g5589 292 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Amo13g5589 292 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Amo13g5589 292 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Amo13g5589 292 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Amo13g5589 292 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Amo13g5589 292 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Amo13g5589 292 PANTHER EREBP TRANSCRIPTION FACTOR 26 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5589 Amo-Chr13 157698891 157701626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5589 26 280 AP2-EREBP Transcription Factor Family AT3G16770 41.053 3.07e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo13g5589 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5589 K09286 - gmx:100817253 215.698